CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90948
EER95025
EER95939
EER96734
EES00139
EES08750
EES12700

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22810.1	EER96734	AT1G80650.1	21798944
AT2G22810.1	EER90948	AT2G22810.1	14983000
AT2G22810.1	EES12700	AT4G11280.1	14983000
AT2G22810.1	EES00139	AT4G26200.1	14983000
AT2G22810.1	EER90948	AT4G37770.1	14983000
AT4G37770.1	EER90948	AT2G22810.1	14983000
AT4G37770.1	EER90948	AT4G37770.1	14983000
AT5G65800.1	EER95939	AT4G02680.1	15118728
AT5G65800.1	EES08750	AT4G02680.1	15118728
AT5G65800.1	EER95025	AT5G58550.1	15118728

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033862_P001	Maize	cytosol	91.15	93.4
TraesCS4B01G058200.1	Wheat	cytosol	81.09	83.09
TraesCS4A01G256500.1	Wheat	cytosol	81.09	83.09
Os03t0727600-01	Rice	cytosol	81.29	82.96
TraesCS4D01G058200.1	Wheat	cytosol	80.89	82.89
Solyc02g063540.1.1	Tomato	cytosol	40.44	70.77
CDY66472	Canola	cytosol	56.74	69.98
HORVU4Hr1G009800.5	Barley	cytosol, plastid	80.28	69.88
GSMUA_Achr1P14280_001	Banana	nucleus	63.78	69.37
CDX75675	Canola	cytosol	62.17	68.51
GSMUA_Achr5P08880_001	Banana	cytosol	64.19	68.45
GSMUA_Achr3P25830_001	Banana	mitochondrion	60.97	67.48
GSMUA_Achr1P04420_001	Banana	cytosol	62.37	67.1
GSMUA_Achr4P01340_001	Banana	mitochondrion	62.37	67.1
Bra010611.1-P	Field mustard	cytosol	62.78	66.52
PGSC0003DMT400008587	Potato	cytosol	61.57	66.38
CDY69462	Canola	cytosol	62.58	66.31
Solyc02g091990.2.1	Tomato	cytosol	62.58	66.31
CDX69326	Canola	cytosol	62.37	66.1
Bra011784.1-P	Field mustard	cytosol	62.17	65.88
AT4G37770.1	Thale cress	cytosol	61.77	65.46
PGSC0003DMT400055203	Potato	cytosol	61.77	65.46
GSMUA_Achr2P08600_001	Banana	cytosol	60.97	65.44
KRH04373	Soybean	cytosol	62.17	65.05
CDY23035	Canola	cytosol	60.76	64.81
Bra012924.1-P	Field mustard	cytosol	61.17	64.68
CDY02111	Canola	cytosol	61.17	64.68
CDY08163	Canola	cytosol	60.97	64.47
KRH77167	Soybean	cytosol	60.97	64.47
VIT_00s1437g00010.t01	Wine grape	cytosol	60.76	64.39
VIT_00s0840g00010.t01	Wine grape	cytosol	60.76	64.39
PGSC0003DMT400008605	Potato	cytosol	54.73	64.3
CDY05953	Canola	cytosol	60.76	64.26
Bra030199.1-P	Field mustard	cytosol	61.17	64.14
CDY25639	Canola	cytosol	61.17	64.14
Solyc03g043890.2.1	Tomato	cytosol	60.76	64.12
Bra017962.1-P	Field mustard	cytosol	60.56	64.04
KRH58165	Soybean	cytosol	61.77	63.96
KRH28319	Soybean	cytosol	60.56	63.91
AT5G65800.1	Thale cress	cytosol	60.36	63.83
AT3G49700.1	Thale cress	cytosol	60.36	63.83
Bra031846.1-P	Field mustard	cytosol	60.16	63.62
Bra037829.1-P	Field mustard	cytosol	55.94	63.33
CDX81296	Canola	cytosol	55.94	63.33
CDY18674	Canola	cytosol	55.73	63.1
AT2G22810.1	Thale cress	cytosol	60.16	63.08
CDX89520	Canola	cytosol	59.96	62.87
Bra024420.1-P	Field mustard	cytosol	59.36	62.77
PGSC0003DMT400013977	Potato	cytosol	45.47	60.59
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.31	56.16
EES12700	Sorghum	cytosol	48.09	48.68
EER87775	Sorghum	plastid	39.84	35.8
KXG35682	Sorghum	cytosol	18.71	18.79
OQU91865	Sorghum	cytosol	10.87	17.82
KXG38638	Sorghum	cytosol	17.3	17.41
KXG34265	Sorghum	cytosol	16.3	16.95
EER99708	Sorghum	mitochondrion	17.71	16.27

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:8060541	InterPro:Aminotransferase_I/II	UniProt:C5WM16
EnsemblPlants:EER90948	ProteinID:EER90948	ProteinID:EER90948.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016847	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3001G105900
SUPFAM:SSF53383	UniParc:UPI0001A8246E	RefSeq:XP_002463950.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:8118218..8121198

Molecular Weight (calculated)

54275.9 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.143

Length

497 amino acids

Sequence
(BLAST)

001: MVSMMIADEK PQPQLLSKKA TCNSHGQDSS YFLGWEEYEK NPYDPVANPG GIIQMGLAEN QLSFDLLEAW LEDNPDALGL RRGGASVFRE LALFQDYHGM
101: PAFKNALARF MSEQRGYRVT FDPSNIVLTA GATSANEALM FCLADHGDAF LIPTPYYPGF DRDLKWRTGA EIVPVHCTSA NGFRVTRAAL DDAYRRAQKQ
201: RLRVKGVLIT NPSNPLGTTS PRADLEMLVD FVAAKGIHLV SDEIYSGTAF AEPGFVSVLE VVAARRRNST DADGLLSERV HVVYSLSKDL GLPGFRVGAI
301: YSSNAGVVSA ATKMSSFGLV SSQTQHLLAS LLGDRDFTRR YIAENTRRIK ARRDQLAEGL AAIGGVECLE SNAGLFCWVN MRGLMRTPSF EGEMELWKKV
401: VFEVGLNISP GSSCHCREPG WFRVCFANMS AKTLDVALNR LAAFAEAAAV EGRGRGPAAA AAARRVLGPA RSMSLPIRFS WANRLTPASA ADRKAER

Best Arabidopsis Sequence Match ( AT4G37770.1 )
(BLAST)

001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER

Arabidopsis Description

ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.