CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007937_P001	Maize	mitochondrion	91.0	90.81
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	91.0	89.69
TraesCS2B01G280600.1	Wheat	plastid	87.66	87.47
TraesCS2A01G261600.1	Wheat	peroxisome	87.66	87.47
CDY25781	Canola	cytosol	10.46	86.21
VIT_00s0225g00130.t01	Wine grape	cytosol	86.19	85.65
GSMUA_Achr6P29540_001	Banana	cytosol	85.36	84.82
GSMUA_Achr8P15810_001	Banana	cytosol	85.15	84.62
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	14.85	83.53
PGSC0003DMT400047918	Potato	cytosol	83.68	83.16
KRH69622	Soybean	cytosol	83.05	82.54
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.59	82.44
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.59	82.44
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.59	82.44
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	82.85	82.33
KRH74536	Soybean	cytosol	82.85	82.33
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	83.47	82.1
CDY61225	Canola	peroxisome	81.8	81.29
Bra016353.1-P	Field mustard	cytosol	81.17	81.17
Bra016202.1-P	Field mustard	cytosol	81.8	81.12
AT1G23310.1	Thale cress	cytosol	81.59	81.08
CDY44130	Canola	cytosol	80.96	80.96
CDY04729	Canola	cytosol	80.96	80.96
Bra024580.1-P	Field mustard	cytosol	80.96	80.96
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	81.38	80.87
Solyc01g007940.2.1	Tomato	cytosol	79.92	80.76
CDY41452	Canola	peroxisome	80.75	80.75
CDY66294	Canola	cytosol	80.75	80.25
CDX91708	Canola	peroxisome	66.95	79.4
Bra012371.1-P	Field mustard	cytosol	75.52	79.17
CDY25780	Canola	peroxisome	66.11	78.41
TraesCS2D01G262400.2	Wheat	cytosol	81.59	78.16
CDY12474	Canola	peroxisome, plastid	76.57	68.16
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.4	50.58
KXG38638	Sorghum	cytosol	52.09	50.4
EER99708	Sorghum	mitochondrion	50.21	44.36
KXG35682	Sorghum	cytosol	43.93	42.42
OQU91865	Sorghum	cytosol	26.36	41.58
CDX86161	Canola	cytosol	6.07	21.97
EES00139	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.41	19.01
EES12700	Sorghum	cytosol	18.62	18.13
EER90948	Sorghum	cytosol	16.95	16.3
EER87775	Sorghum	plastid	18.83	16.27

Protein Annotations

MapMan:1.3.3.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A1B6Q8L5	InterPro:Aminotransferase_I/II	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KXG34265	ProteinID:KXG34265	ProteinID:KXG34265.1	PFAM:PF00155
PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	EnsemblPlantsGene:SORBI_3002G006600
SUPFAM:SSF53383	UniParc:UPI0002207049	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:630662..636184

Molecular Weight (calculated)

53308.4 Da

IEP (calculated)

8.233

GRAVY (calculated)

-0.227

Length

478 amino acids

Sequence
(BLAST)

001: MARKPLDYEE LNENVKKVQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFGR QVVALCQAPF LLDDPHVGLM FPADAIARAK HYLAMAKGGL
101: GAYSDSRGIP GIRKEVADFI YKRDGYPTDP ELIYLTDGAS KGVMQILNTI IRNERDGILV PVPQYPLYSA SIALYGGALV PYYLEEEANW SLDFVNIRKT
201: VAEARSKGIT VRAMVIINPG NPTGQCLSEP NIKEVLQFCY HENLVLLADE VYQQNVFQDE RPFISSRKVM FDMGPPLSRE LQLVSFHTVS KGNWGECGQR
301: GGYFEMTNLP PKTVDEIYKV ASIALSPNVP GQIFMGVMVN PPKPGDISYP KFAAESKSVH ESLRRRARMM TDGFNSCRNV VCNFTEGAMY SFPQIRLPPR
401: AIEAAKRAGK AADVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEDFPAIMSS FKKFNDSFME QYEGYSRM

Best Arabidopsis Sequence Match ( AT1G23310.1 )
(BLAST)

001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M

Arabidopsis Description

GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.