Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
- plastid 2
- vacuole 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX86159 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 56.47 | 36.64 |
CDX88411 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 56.47 | 36.64 |
CDX91589 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 56.47 | 36.64 |
Bra009959.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 78.82 | 19.48 |
CDX91708 | Canola | peroxisome | 88.24 | 18.61 |
CDY25780 | Canola | peroxisome | 84.71 | 17.87 |
Solyc01g007940.2.1 | Tomato | cytosol | 96.47 | 17.34 |
Bra016353.1-P | Field mustard | cytosol | 89.41 | 15.9 |
Bra012371.1-P | Field mustard | cytosol | 83.53 | 15.57 |
CDY44130 | Canola | cytosol | 87.06 | 15.48 |
Bra024580.1-P | Field mustard | cytosol | 87.06 | 15.48 |
CDY41452 | Canola | peroxisome | 87.06 | 15.48 |
CDY04729 | Canola | cytosol | 87.06 | 15.48 |
GSMUA_Achr8P15810_001 | Banana | cytosol | 87.06 | 15.38 |
GSMUA_Achr6P29540_001 | Banana | cytosol | 87.06 | 15.38 |
VIT_00s0225g00130.t01 | Wine grape | cytosol | 85.88 | 15.18 |
CDY61225 | Canola | peroxisome | 85.88 | 15.18 |
Bra016202.1-P | Field mustard | cytosol | 85.88 | 15.15 |
CDY66294 | Canola | cytosol | 84.71 | 14.97 |
AT1G70580.1 | Thale cress | cytosol, nucleus, peroxisome | 84.71 | 14.97 |
KXG34265 | Sorghum | cytosol | 83.53 | 14.85 |
Os07t0108300-01 | Rice | extracellular, nucleus, plasma membrane | 84.71 | 14.85 |
Zm00001d007937_P001 | Maize | mitochondrion | 83.53 | 14.82 |
KRH69622 | Soybean | cytosol | 83.53 | 14.76 |
PGSC0003DMT400047918 | Potato | cytosol | 83.53 | 14.76 |
AT1G23310.1 | Thale cress | cytosol | 83.53 | 14.76 |
KRH74536 | Soybean | cytosol | 83.53 | 14.76 |
TraesCS2A01G261600.1 | Wheat | peroxisome | 81.18 | 14.4 |
TraesCS2B01G280600.1 | Wheat | plastid | 81.18 | 14.4 |
HORVU2Hr1G063740.6 | Barley | peroxisome, vacuole | 80.0 | 13.99 |
CDY12474 | Canola | peroxisome, plastid | 87.06 | 13.78 |
TraesCS2D01G262400.2 | Wheat | cytosol | 54.12 | 9.22 |
PGSC0003DMT400012549 | Potato | cytosol, mitochondrion | 50.59 | 8.83 |
PGSC0003DMT400092723 | Potato | cytosol | 11.76 | 8.55 |
PGSC0003DMT400084228 | Potato | cytosol | 11.76 | 5.71 |
PGSC0003DMT400055203 | Potato | cytosol | 17.65 | 3.2 |
PGSC0003DMT400013977 | Potato | cytosol | 12.94 | 2.95 |
PGSC0003DMT400008605 | Potato | cytosol | 14.12 | 2.84 |
PGSC0003DMT400008587 | Potato | cytosol | 14.12 | 2.6 |
PGSC0003DMT400079664 | Potato | golgi, mitochondrion, plastid | 15.29 | 2.58 |
PGSC0003DMT400012600 | Potato | cytosol | 14.12 | 2.57 |
PGSC0003DMT400000771 | Potato | cytosol | 12.94 | 2.53 |
PGSC0003DMT400043903 | Potato | cytosol | 12.94 | 2.49 |
PGSC0003DMT400000553 | Potato | cytosol | 14.12 | 2.47 |
PGSC0003DMT400032096 | Potato | cytosol | 12.94 | 2.27 |
PGSC0003DMT400031769 | Potato | cytosol | 12.94 | 2.27 |
PGSC0003DMT400010000 | Potato | plastid | 14.12 | 2.18 |
PGSC0003DMT400012864 | Potato | cytosol | 11.76 | 2.06 |
PGSC0003DMT400014932 | Potato | cytosol | 11.76 | 2.06 |
PGSC0003DMT400055753 | Potato | vacuole | 1.18 | 0.26 |
CDY25781 | Canola | cytosol | 0.0 | 0.0 |
CDX86161 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400042202 | EnsemblPlantsGene:PGSC0003DMG400016373 | Gene3D:3.90.1150.10 | GO:GO:0003674 | GO:GO:0003824 | InterPro:IPR015422 |
InterPro:PyrdxlP-dep_Trfase | InterPro:PyrdxlP-dep_Trfase_dom1 | ncoils:Coil | PANTHER:PTHR11751 | PANTHER:PTHR11751:SF373 | PGSC:PGSC0003DMG400016373 |
SUPFAM:SSF53383 | UniParc:UPI000296373D | UniProt:M1BCN2 | MapMan:35.1 | : | : |
Description
Alanine-2-oxoglutarate aminotransferase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016373]
Coordinates
chr1:-:3571031..3572031
Molecular Weight (calculated)
9475.5 Da
IEP (calculated)
4.719
GRAVY (calculated)
-0.084
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MYSFPQIQLP PGAIDAAKKL EKAPDVFYCL KLLEATGIST VPGSGFGQKE GVFHLRTTIL PVEEEMPSIM ASFKKFNDEF MAQYE
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.