Factsheet for PGSC0003DMT400055753

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000553
PGSC0003DMT400012864
PGSC0003DMT400014932
PGSC0003DMT400031769
PGSC0003DMT400032096
PGSC0003DMT400055753
PGSC0003DMT400084228

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61510.1	PGSC0003DMT400000553	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400055753	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400084228	AT3G61510.1	14983000
AT3G61510.1	PGSC0003DMT400012864	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400014932	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400031769	AT4G11280.1	14983000
AT3G61510.1	PGSC0003DMT400032096	AT4G11280.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050010.2.1	Tomato	cytosol	63.95	51.05
PGSC0003DMT400000553	Potato	cytosol	62.11	48.56
PGSC0003DMT400031769	Potato	cytosol	54.21	42.47
PGSC0003DMT400032096	Potato	cytosol	53.95	42.36
GSMUA_AchrUn_...	Banana	cytosol	48.42	41.53
KRH65284	Soybean	cytosol	13.42	41.46
KRH48058	Soybean	cytosol	51.58	41.35
KRH00855	Soybean	cytosol	52.11	41.25
PGSC0003DMT400014932	Potato	cytosol	52.63	41.15
KRH06585	Soybean	cytosol	51.32	41.14
PGSC0003DMT400012864	Potato	cytosol	52.11	40.82
Bra007611.1-P	Field mustard	cytosol	50.79	40.8
CDY11360	Canola	cytosol	50.79	40.8
CDY65356	Canola	cytosol	50.79	40.8
PGSC0003DMT400000771	Potato	cytosol	46.32	40.55
AT3G61510.1	Thale cress	cytosol	51.84	40.37
KRH40379	Soybean	cytosol	51.32	40.21
VIT_15s0046g02220.t01	Wine grape	cytosol	46.05	39.95
GSMUA_Achr4P24930_001	Banana	cytosol	50.53	39.92
GSMUA_Achr4P29150_001	Banana	cytosol	50.79	39.71
PGSC0003DMT400043903	Potato	cytosol	45.26	39.0
PGSC0003DMT400008587	Potato	cytosol	46.32	38.18
PGSC0003DMT400055203	Potato	cytosol	47.11	38.17
Zm00001d002592_P002	Maize	cytosol	48.68	38.14
Os04t0578000-01	Rice	cytosol	48.42	38.1
TraesCS2B01G414800.1	Wheat	cytosol	48.68	38.07
EES12700	Sorghum	cytosol	48.95	37.88
TraesCS2D01G394200.1	Wheat	cytosol	48.42	37.86
TraesCS2A01G396400.1	Wheat	cytosol	48.42	37.86
PGSC0003DMT400084228	Potato	cytosol	17.11	37.14
PGSC0003DMT400008605	Potato	cytosol	41.05	36.88
Zm00001d026060_P003	Maize	cytosol	49.21	36.67
HORVU2Hr1G094230.2	Barley	cytosol	46.58	36.57
PGSC0003DMT400012600	Potato	cytosol	44.47	36.19
PGSC0003DMT400013977	Potato	cytosol	34.47	35.12
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	37.37	28.17
PGSC0003DMT400010000	Potato	plastid	37.11	25.64
PGSC0003DMT400047918	Potato	cytosol	20.79	16.42
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	19.47	15.2
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	0.26	1.18
PGSC0003DMT400092723	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.4.4	InterPro:Aminotransferase_I/II	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1BYG1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400021651
PGSC:PGSC0003DMG400021651	EnsemblPlants:PGSC0003DMT400055753	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF25
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI00029671C3	SEG:seg

Description

1-aminocyclopropane-1-carboxylate synthase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400021651]

Coordinates

chr5:+:44070623..44073744

Molecular Weight (calculated)

42771.6 Da

IEP (calculated)

6.079

GRAVY (calculated)

-0.069

Length

380 amino acids

Sequence
(BLAST)

001: MNGFFLLVAK LQLCYQLLLL LLPNFVRRNL LAIREVFVIT SNVVLSELAT NEQHGENSLY FEGWKAYNKD PFDLKDNPNG IIQLGLAENQ LSVSMIEDWN
101: KRNLQAFIFS ITNQDHGLFE RLINGIAKLM EKTRGGNVKF DAERIVLTAG ATAANETLIS CLADPEDAFL IPAPYYTGFD RDLCWRTGVQ LVPISCNNFK
201: ITIEAVKEAY EKAQKANIKL KGLILTNPSN PLGTVLDRDT LKNILTFTND LVCDEVYAGT VFDAPRFVSI AEIIKENEIY VNKNLVHIVS SLSKDMGLPG
301: FRAGILYSFN DDVVNFARKR SNIGDLNETQ HFLASMLADD EFVQEFLTES GKRLRKRHEK FSSGLEKIGI KCLKSNAGWI

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.