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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400000553
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400012864
PGSC0003DMT400013977
PGSC0003DMT400014932
PGSC0003DMT400031769
PGSC0003DMT400032096
PGSC0003DMT400046382
PGSC0003DMT400055203
PGSC0003DMT400055753
PGSC0003DMT400084228

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11280.1 PGSC0003DMT400008587 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400008605 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400013977 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400055203 AT2G22810.1 14983000
AT4G11280.1 PGSC0003DMT400000553 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400055753 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400084228 AT3G61510.1 14983000
AT4G11280.1 PGSC0003DMT400012864 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400014932 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400031769 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400032096 AT4G11280.1 14983000
AT4G11280.1 PGSC0003DMT400046382 AT4G26080.1 19705149
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g056180.1.1 Tomato cytosol 91.96 94.29
PGSC0003DMT400032096 Potato cytosol 72.37 72.52
PGSC0003DMT400031769 Potato cytosol 72.16 72.16
PGSC0003DMT400014932 Potato cytosol 70.52 70.37
VIT_02s0025g00360.t01 Wine grape cytosol 63.71 64.24
KRH27892 Soybean cytosol 62.06 62.71
PGSC0003DMT400000553 Potato cytosol 61.86 61.73
KRH59970 Soybean cytosol 61.44 61.57
GSMUA_AchrUn_... Banana cytosol 55.88 61.17
KRH41241 Soybean cytosol 60.82 60.95
GSMUA_Achr4P29150_001 Banana cytosol 60.41 60.29
PGSC0003DMT400084228 Potato cytosol 21.44 59.43
GSMUA_Achr4P24930_001 Banana cytosol 58.76 59.25
AT4G11280.1 Thale cress cytosol 59.79 58.59
CDY13251 Canola cytosol 58.76 58.04
CDX86796 Canola cytosol 58.14 57.79
Bra035236.1-P Field mustard cytosol 58.14 57.79
PGSC0003DMT400092723 Potato cytosol 13.61 56.41
TraesCS2A01G396400.1 Wheat cytosol 55.67 55.56
TraesCS2B01G414800.1 Wheat cytosol 55.46 55.35
TraesCS2D01G394200.1 Wheat cytosol 55.46 55.35
Os04t0578000-01 Rice cytosol 55.05 55.28
EES12700 Sorghum cytosol 55.05 54.38
Zm00001d002592_P002 Maize cytosol 54.23 54.23
PGSC0003DMT400000771 Potato cytosol 48.25 53.92
PGSC0003DMT400043903 Potato cytosol 48.25 53.06
PGSC0003DMT400055753 Potato vacuole 40.82 52.11
Zm00001d026060_P003 Maize cytosol 54.23 51.57
PGSC0003DMT400008587 Potato cytosol 48.87 51.41
PGSC0003DMT400008605 Potato cytosol 44.33 50.83
PGSC0003DMT400013977 Potato cytosol 38.56 50.13
PGSC0003DMT400055203 Potato cytosol 48.45 50.11
PGSC0003DMT400012600 Potato cytosol 47.01 48.82
HORVU2Hr1G094230.2 Barley cytosol 43.92 44.01
PGSC0003DMT400079664 Potato golgi, mitochondrion, plastid 37.32 35.91
PGSC0003DMT400010000 Potato plastid 37.53 33.09
PGSC0003DMT400047918 Potato cytosol 19.59 19.75
PGSC0003DMT400012549 Potato cytosol, mitochondrion 18.97 18.89
PGSC0003DMT400042202 Potato cytosol, mitochondrion, peroxisome, plastid 2.06 11.76
Protein Annotations
EntrezGene:102588307MapMan:11.5.1.1Gene3D:3.40.640.10Gene3D:3.90.1150.10InterPro:Aminotransferase_I/IIGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0030170
InterPro:IPR015421InterPro:IPR015422UniProt:M1A1X2InterPro:NHTrfase_class1_PyrdxlP-BSPFAM:PF00155EnsemblPlantsGene:PGSC0003DMG400005008
PGSC:PGSC0003DMG400005008EnsemblPlants:PGSC0003DMT400012864PRINTS:PR00753ScanProsite:PS00105PANTHER:PTHR43795PANTHER:PTHR43795:SF6
InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383UniParc:UPI0002956048RefSeq:XP_006360739.1
SEG:seg:::::
Description
ACC synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400005008]
Coordinates
chr12:+:53899009..53902670
Molecular Weight (calculated)
54863.7 Da
IEP (calculated)
4.819
GRAVY (calculated)
-0.140
Length
485 amino acids
Sequence
(BLAST)
001: MGFISNINNE LLSKVATNNG HGENSAYFDG WKAYEIDPFH PTQNPNGVIQ MGLAENQLCF DLIQEWVVNN QKSSICTAGG CEEFKEIAIY QDYHGLPEFR
101: RAVARFMEKV RGDKIKFDEE RIVMSGGATG AHELLAFCLA DPGEAFLVPT PYYPGFDRDL SWRTGVQLFP IICESSNNFK VTKKALEDAY NKAQESNITI
201: KGLLLNNPSN PLGTILDMET LKDTIRFIND KNIHLVCDEI YAATVFNEPK FISISEVIIS ENVQCNLDLI HIVYSLSKDL GFPGFRVGII YSYNDVVTKC
301: ARKMSSFGLV STQTQYLISN MLLDDTFIEK FVVESRERLE KRHGVFTKGL ENIGINTLES NAGLFCWMDL RSLLKENTFE SEIELWRMII NDVKLNVSPG
401: CSFHCCEPGW FRVCFANMDD DTMRIALRRI EIFMVQYKGI NNIIEEGIEK SLPIALGSVS LRSISDNNVR GRRSIAEGNE LETLL
Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)
001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT
Arabidopsis Description
ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.