CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH04373
KRH12454
KRH19237
KRH27892
KRH28319
KRH37441
KRH41241
KRH58165
KRH59970
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	KRH04373	AT2G22810.1	14983000
AT4G11280.1	KRH28319	AT2G22810.1	14983000
AT4G11280.1	KRH58165	AT2G22810.1	14983000
AT4G11280.1	KRH77167	AT2G22810.1	14983000
AT4G11280.1	KRH27892	AT4G11280.1	14983000
AT4G11280.1	KRH41241	AT4G11280.1	14983000
AT4G11280.1	KRH59970	AT4G11280.1	14983000
AT4G11280.1	KRH02667	AT4G26080.1	19705149
AT4G11280.1	KRH12454	AT4G26080.1	19705149
AT4G11280.1	KRH19237	AT4G26080.1	19705149
AT4G11280.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41241	Soybean	cytosol	78.96	78.31
KRH59970	Soybean	cytosol	78.33	77.69
VIT_02s0025g00360.t01	Wine grape	cytosol	71.04	70.89
PGSC0003DMT400032096	Potato	cytosol	69.79	69.21
Solyc08g081540.2.1	Tomato	cytosol	68.75	68.32
PGSC0003DMT400031769	Potato	cytosol	68.96	68.25
KRH00855	Soybean	cytosol	67.92	67.92
PGSC0003DMT400014932	Potato	cytosol	68.33	67.49
KRH06585	Soybean	cytosol	65.62	66.46
Solyc08g081550.2.1	Tomato	cytosol	65.0	66.1
KRH48058	Soybean	cytosol	65.0	65.82
KRH40379	Soybean	cytosol	66.25	65.57
GSMUA_Achr4P29150_001	Banana	cytosol	66.04	65.23
GSMUA_AchrUn_...	Banana	cytosol	59.79	64.79
AT4G11280.1	Thale cress	cytosol	66.25	64.24
GSMUA_Achr4P24930_001	Banana	cytosol	64.17	64.03
CDX86796	Canola	cytosol	63.96	62.91
Bra035236.1-P	Field mustard	cytosol	63.96	62.91
Solyc12g056180.1.1	Tomato	cytosol	61.88	62.79
CDY13251	Canola	cytosol	63.96	62.53
PGSC0003DMT400012864	Potato	cytosol	62.71	62.06
KRH65284	Soybean	cytosol	15.83	61.79
TraesCS2D01G394200.1	Wheat	cytosol	62.5	61.73
TraesCS2B01G414800.1	Wheat	cytosol	62.5	61.73
Os04t0578000-01	Rice	cytosol	62.08	61.7
TraesCS2A01G396400.1	Wheat	cytosol	62.29	61.52
Zm00001d002592_P002	Maize	cytosol	61.67	61.03
EES12700	Sorghum	cytosol	62.29	60.9
Solyc08g008100.2.1	Tomato	nucleus	44.79	58.9
Zm00001d026060_P003	Maize	cytosol	61.67	58.04
KRH60148	Soybean	cytosol	50.62	55.23
KRH41440	Soybean	cytosol	50.62	55.23
KRH61460	Soybean	cytosol	40.0	54.86
KRH74169	Soybean	cytosol	50.42	54.26
KRH49039	Soybean	cytosol	49.58	53.36
KRH04373	Soybean	cytosol	52.5	53.05
KRH77167	Soybean	cytosol	51.46	52.55
KRH58165	Soybean	cytosol	52.08	52.08
KRH28319	Soybean	cytosol	51.04	52.02
KRH52156	Soybean	cytosol	48.33	49.68
HORVU2Hr1G094230.2	Barley	cytosol	48.96	48.55
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	37.92	36.26
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	37.29	35.73
KRH09217	Soybean	plastid	36.04	32.77
KRH38710	Soybean	plastid	35.62	32.33
KRH74536	Soybean	cytosol	21.25	21.21
KRH69622	Soybean	cytosol	21.04	21.0
KRH06285	Soybean	mitochondrion	19.58	17.54
KRH47719	Soybean	endoplasmic reticulum	19.58	17.38

Protein Annotations

EntrezGene:100793020	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EMBL:ACUP02006735	InterPro:Aminotransferase_I/II
EnsemblPlantsGene:GLYMA_11G021500	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0030170	UniProt:I1LGD4	InterPro:IPR015421	InterPro:IPR015422	EnsemblPlants:KRH27892
ProteinID:KRH27892	ProteinID:KRH27892.1	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI000233C9BA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:1526712..1529646

Molecular Weight (calculated)

54178.9 Da

IEP (calculated)

7.225

GRAVY (calculated)

-0.276

Length

480 amino acids

Sequence
(BLAST)

001: MELMSVNEPQ LLSKIATGDG HGENSPYFDG WKAYEDDPFH PIKNPNGVIQ MGLAENQLAS DLVQNWLTNK PRASICTPEG VRDFKAIANF QDYHGLPKFR
101: KAVAKFMART RGNRVTFDPD RIVMSGGATG AHEVTAFCLA DPGEAFLVPT PYYAGFDRDL RWRTGVELVP VKCESSNDFK LTRKALQEAY EKGKENNIRI
201: KGLLITNPSN PLGTIMDRET LRTVVSFINE KHIHLVSDEI YAGTVFCHPG FTSIAEVIEE DTDIECDRDL IHIVYSLSKD MGFPGFRVGI IYSYNDAVVN
301: CARKMSSFGL VSTQTQYLLA SMLSDDEFVE RFLEESAKRL AKRYGVFCRG LAQVGIKCLA SNAGLFLWMD LRRLLKKPTF EAEMELWKVI IEQVKINISP
401: GSSFHCSEPG WFRVCYANMD DRTVEVSLAR MRTFVNQNTE AKKSCSQRNL RLSFSFRKMD EYLVSPHSPF PQSPLVKAST

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.