CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02667
KRH04373
KRH12454
KRH19237
KRH27892
KRH28319
KRH37441
KRH41241
KRH58165
KRH59970
KRH77167

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	KRH04373	AT2G22810.1	14983000
AT4G11280.1	KRH28319	AT2G22810.1	14983000
AT4G11280.1	KRH58165	AT2G22810.1	14983000
AT4G11280.1	KRH77167	AT2G22810.1	14983000
AT4G11280.1	KRH27892	AT4G11280.1	14983000
AT4G11280.1	KRH41241	AT4G11280.1	14983000
AT4G11280.1	KRH59970	AT4G11280.1	14983000
AT4G11280.1	KRH02667	AT4G26080.1	19705149
AT4G11280.1	KRH12454	AT4G26080.1	19705149
AT4G11280.1	KRH19237	AT4G26080.1	19705149
AT4G11280.1	KRH37441	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41241	Soybean	cytosol	96.9	96.9
KRH27892	Soybean	cytosol	77.69	78.33
VIT_02s0025g00360.t01	Wine grape	cytosol	70.04	70.48
KRH00855	Soybean	cytosol	67.98	68.54
PGSC0003DMT400032096	Potato	cytosol	67.98	67.98
Solyc08g081540.2.1	Tomato	cytosol	67.15	67.29
PGSC0003DMT400014932	Potato	cytosol	67.56	67.28
KRH48058	Soybean	cytosol	65.5	66.88
KRH06585	Soybean	cytosol	65.5	66.88
PGSC0003DMT400031769	Potato	cytosol	66.74	66.6
KRH40379	Soybean	cytosol	66.74	66.6
KRH65284	Soybean	cytosol	16.74	65.85
Solyc08g081550.2.1	Tomato	cytosol	64.05	65.68
GSMUA_Achr4P24930_001	Banana	cytosol	64.46	64.86
GSMUA_Achr4P29150_001	Banana	cytosol	65.08	64.81
AT4G11280.1	Thale cress	cytosol	65.91	64.44
CDX86796	Canola	cytosol	64.88	64.34
Bra035236.1-P	Field mustard	cytosol	64.88	64.34
CDY13251	Canola	cytosol	65.08	64.15
GSMUA_AchrUn_...	Banana	cytosol	57.64	62.98
Solyc12g056180.1.1	Tomato	cytosol	60.33	61.73
PGSC0003DMT400012864	Potato	cytosol	61.57	61.44
TraesCS2B01G414800.1	Wheat	cytosol	61.57	61.32
TraesCS2A01G396400.1	Wheat	cytosol	61.57	61.32
TraesCS2D01G394200.1	Wheat	cytosol	61.57	61.32
EES12700	Sorghum	cytosol	62.19	61.3
Solyc08g008100.2.1	Tomato	nucleus	46.07	61.1
Os04t0578000-01	Rice	cytosol	60.74	60.87
Zm00001d002592_P002	Maize	cytosol	60.74	60.62
Zm00001d026060_P003	Maize	cytosol	61.57	58.43
KRH41440	Soybean	cytosol	52.27	57.5
KRH60148	Soybean	cytosol	52.07	57.27
KRH74169	Soybean	cytosol	51.45	55.83
KRH49039	Soybean	cytosol	51.45	55.83
KRH04373	Soybean	cytosol	51.65	52.63
KRH77167	Soybean	cytosol	50.83	52.34
KRH28319	Soybean	cytosol	50.62	52.02
KRH58165	Soybean	cytosol	51.24	51.67
KRH61460	Soybean	cytosol	36.98	51.14
KRH52156	Soybean	cytosol	45.87	47.54
HORVU2Hr1G094230.2	Barley	cytosol	47.52	47.52
KRH77442	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	36.16	34.86
KRH27993	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	35.54	34.33
KRH09217	Soybean	plastid	36.98	33.9
KRH38710	Soybean	plastid	36.78	33.65
KRH69622	Soybean	cytosol	20.66	20.79
KRH74536	Soybean	cytosol	20.66	20.79
KRH06285	Soybean	mitochondrion	19.83	17.91
KRH47719	Soybean	endoplasmic reticulum	19.83	17.74

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	EntrezGene:547976	UniProt:A0A0R0K3Y9	InterPro:Aminotransferase_I/II
ncoils:Coil	EnsemblPlantsGene:GLYMA_05G211700	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009693	GO:GO:0009835
GO:GO:0009987	GO:GO:0016829	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421
InterPro:IPR015422	EnsemblPlants:KRH59970	ProteinID:KRH59970	ProteinID:KRH59970.1	InterPro:NHTrfase_class1_PyrdxlP-BS	UniProt:P31531
PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0000124E35	EMBL:X67100	:

Description

ACS1hypothetical protein

Coordinates

chr5:-:39315581..39318444

Molecular Weight (calculated)

54733.8 Da

IEP (calculated)

6.198

GRAVY (calculated)

-0.216

Length

484 amino acids

Sequence
(BLAST)

001: MGLMDVDQTQ LLSKMVIGDG HGEASPYFDG WKAYDENPFH PKENPNGVIQ MGLAENQLTS DLVEDWILNN PEASICTPEG INDFRAIANF QDYHGLPEFR
101: NAVAKFMGRT RGNRVTFDPD RIVMSGGATG AHEVTTFCLA DPGDAFLVPI PYYPGFDRDL RWRTGIKLVP VMCDSSNNFK LTKQALEDAY EKAKEDNIRV
201: KGLLITNPSN PLGTVMDRNT LRTVMSFINE KRIHLVSDEI YSATVFSHPS FISIAEILEE DTDIECDRNL VHIVYSLSKD MGFPGFRVGI IYSYNDAVVH
301: CARKMSSFGL VSTQTQYLLA SMLNDDEFVE SFLVESAKRL AQRHRVFTGG LAKVGIKCLQ SNAGLFVWMD LRQLLKKPTL DSEMELWRVI IDEVKINVSP
401: GSSFHCTEPG WFRVCYANMD DMAVQIALQR IRNFVLQNKE IMVPNKKHCW HSNLRLSLKT RRFDDIMMSP HSPIPQSPLV KATI

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.