Factsheet for PGSC0003DMT400031769

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000553
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400012864
PGSC0003DMT400013977
PGSC0003DMT400014932
PGSC0003DMT400031769
PGSC0003DMT400032096
PGSC0003DMT400046382
PGSC0003DMT400055203
PGSC0003DMT400055753
PGSC0003DMT400084228

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	PGSC0003DMT400008587	AT2G22810.1	14983000
AT4G11280.1	PGSC0003DMT400008605	AT2G22810.1	14983000
AT4G11280.1	PGSC0003DMT400013977	AT2G22810.1	14983000
AT4G11280.1	PGSC0003DMT400055203	AT2G22810.1	14983000
AT4G11280.1	PGSC0003DMT400000553	AT3G61510.1	14983000
AT4G11280.1	PGSC0003DMT400055753	AT3G61510.1	14983000
AT4G11280.1	PGSC0003DMT400084228	AT3G61510.1	14983000
AT4G11280.1	PGSC0003DMT400012864	AT4G11280.1	14983000
AT4G11280.1	PGSC0003DMT400014932	AT4G11280.1	14983000
AT4G11280.1	PGSC0003DMT400031769	AT4G11280.1	14983000
AT4G11280.1	PGSC0003DMT400032096	AT4G11280.1	14983000
AT4G11280.1	PGSC0003DMT400046382	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092723	Potato	cytosol	24.12	100.0
Solyc08g081550.2.1	Tomato	cytosol	92.99	95.55
PGSC0003DMT400032096	Potato	cytosol	95.26	95.45
PGSC0003DMT400014932	Potato	cytosol	78.97	78.81
VIT_02s0025g00360.t01	Wine grape	cytosol	72.37	72.97
PGSC0003DMT400012864	Potato	cytosol	72.16	72.16
KRH27892	Soybean	cytosol	68.25	68.96
KRH41241	Soybean	cytosol	67.42	67.56
KRH59970	Soybean	cytosol	66.6	66.74
PGSC0003DMT400000553	Potato	cytosol	65.77	65.64
AT4G11280.1	Thale cress	cytosol	66.39	65.05
GSMUA_Achr4P29150_001	Banana	cytosol	64.33	64.2
CDY13251	Canola	cytosol	64.95	64.15
GSMUA_AchrUn_...	Banana	cytosol	58.14	63.66
Bra035236.1-P	Field mustard	cytosol	63.71	63.32
CDX86796	Canola	cytosol	63.71	63.32
GSMUA_Achr4P24930_001	Banana	cytosol	61.44	61.95
PGSC0003DMT400084228	Potato	cytosol	22.06	61.14
TraesCS2A01G396400.1	Wheat	cytosol	60.21	60.08
Os04t0578000-01	Rice	cytosol	59.79	60.04
TraesCS2D01G394200.1	Wheat	cytosol	60.0	59.88
TraesCS2B01G414800.1	Wheat	cytosol	60.0	59.88
EES12700	Sorghum	cytosol	60.0	59.27
Zm00001d002592_P002	Maize	cytosol	59.18	59.18
PGSC0003DMT400000771	Potato	cytosol	50.52	56.45
PGSC0003DMT400043903	Potato	cytosol	51.13	56.24
Zm00001d026060_P003	Maize	cytosol	58.76	55.88
PGSC0003DMT400055753	Potato	vacuole	42.47	54.21
PGSC0003DMT400008587	Potato	cytosol	49.07	51.63
PGSC0003DMT400008605	Potato	cytosol	44.95	51.54
PGSC0003DMT400055203	Potato	cytosol	48.45	50.11
PGSC0003DMT400013977	Potato	cytosol	37.94	49.33
PGSC0003DMT400012600	Potato	cytosol	46.8	48.61
HORVU2Hr1G094230.2	Barley	cytosol	47.63	47.73
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	38.76	37.3
PGSC0003DMT400010000	Potato	plastid	37.73	33.27
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	20.21	20.12
PGSC0003DMT400047918	Potato	cytosol	19.38	19.54
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	2.27	12.94

Protein Annotations

EntrezGene:102582710	MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	UniProt:M1AW72	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155
EnsemblPlantsGene:PGSC0003DMG400012186	PGSC:PGSC0003DMG400012186	EnsemblPlants:PGSC0003DMT400031769	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795
PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI000295AB04
RefSeq:XP_006343930.1	SEG:seg	:	:	:	:

Description

1-amino-cyclopropane-1-carboxylate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400012186]

Coordinates

chr8:-:55234933..55238294

Molecular Weight (calculated)

54759.7 Da

IEP (calculated)

5.849

GRAVY (calculated)

-0.193

Length

485 amino acids

Sequence
(BLAST)

001: MVSISNNNQK QQLLSKIATN DGHGENSPYF DGWKAYANDP FHLTDNPNGV IQMGLAENQL CFDLIQEWVV NNPKASICTV EGAENFQDIA IFQDYHGLPE
101: FRQAVAKFME KVRGDKVTFD PDRIVMSGGA TGAHEMLAFC LADPGDAFLV PTPYYPGFDR DLRWRTGVQL FPVVCESCND FKVTKKALEE AYEKAQQSNI
201: KIKGLLINNP SNPLGTLLDK DTLQDIVTFI NSKNIHLVCD EIYAATVFDQ PRFISVSEIV EEMIECNKDL IHIVYSLSKD LGFPGFRVGI VYSYNDTVVN
301: IARKMSSFGL VSTQTQHLLA SMLSDEVFIE KFIAESSERL GERQGMFTKG LAEVGISTLK SNAGLFFWMD LRRLLKEATF DGELELWRMI INEVKLNVSP
401: GCSFHCSEPG WFRVCFANMD DETMRIALKR ISYFVLQPKG LNNKAAVNKQ CSRRKLQISL SFRRLDHEFM NSPAHSPMNS PLVRT

Best Arabidopsis Sequence Match ( AT4G11280.1 )
(BLAST)

001: MVAFATEKKQ DLNLLSKIAS GDGHGENSSY FDGWKAYEEN PFHPIDRPDG VIQMGLAENQ LCGDLMRKWV LKHPEASICT SEGVNQFSDI AIFQDYHGLP
101: EFRQAVAKFM EKTRNNKVKF DPDRIVMSGG ATGAHETVAF CLANPGDGFL VPTPYYPGFD RDLRWRTGVN LVPVTCHSSN GFKITVEALE AAYENARKSN
201: IPVKGLLVTN PSNPLGTTLD RECLKSLVNF TNDKGIHLIA DEIYAATTFG QSEFISVAEV IEEIEDCNRD LIHIVYSLSK DMGLPGLRVG IVYSYNDRVV
301: QIARKMSSFG LVSSQTQHLI AKMLSDEEFV DEFIRESKLR LAARHAEITT GLDGLGIGWL KAKAGLFLWM DLRNLLKTAT FDSETELWRV IVHQVKLNVS
401: PGGSFHCHEP GWFRVCFANM DHKTMETALE RIRVFTSQLE EETKPMAATT MMAKKKKKCW QSNLRLSFSD TRRFDDGFFS PHSPVPPSPL VRAQT

Arabidopsis Description

ACS61-aminocyclopropane-1-carboxylate synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.