Factsheet for PGSC0003DMT400043903

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000771
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400013977
PGSC0003DMT400043903
PGSC0003DMT400055203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	PGSC0003DMT400008587	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400008605	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400013977	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400055203	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400000771	AT4G26200.1	14983000
AT4G26200.1	PGSC0003DMT400043903	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g026900.1.1	Tomato	cytosol	93.88	93.88
PGSC0003DMT400000771	Potato	cytosol	81.18	82.49
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	81.86	81.12
KRH41440	Soybean	cytosol	79.37	79.55
KRH49039	Soybean	cytosol	80.05	79.15
KRH60148	Soybean	cytosol	78.91	79.09
KRH74169	Soybean	cytosol	79.37	78.48
AT4G26200.1	Thale cress	cytosol	75.74	74.72
CDX89355	Canola	cytosol	75.28	74.11
Bra026456.1-P	Field mustard	cytosol	75.06	73.88
CDX94359	Canola	cytosol	74.83	73.66
CDY71142	Canola	cytosol	74.6	73.44
Bra019117.1-P	Field mustard	cytosol	73.92	72.28
CDY42751	Canola	cytosol	73.92	72.28
CDX92755	Canola	cytosol	68.03	72.12
CDY72652	Canola	cytosol	32.65	71.64
PGSC0003DMT400008587	Potato	cytosol	57.37	54.88
PGSC0003DMT400008605	Potato	cytosol	52.61	54.85
PGSC0003DMT400055203	Potato	cytosol	57.37	53.94
PGSC0003DMT400013977	Potato	cytosol	44.9	53.08
PGSC0003DMT400014932	Potato	cytosol	57.14	51.85
PGSC0003DMT400012600	Potato	cytosol	54.42	51.39
PGSC0003DMT400031769	Potato	cytosol	56.24	51.13
PGSC0003DMT400032096	Potato	cytosol	56.01	51.03
PGSC0003DMT400000553	Potato	cytosol	55.33	50.21
PGSC0003DMT400084228	Potato	cytosol	19.73	49.71
PGSC0003DMT400012864	Potato	cytosol	53.06	48.25
PGSC0003DMT400055753	Potato	vacuole	39.0	45.26
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	46.03	40.28
PGSC0003DMT400092723	Potato	cytosol	9.52	35.9
PGSC0003DMT400010000	Potato	plastid	44.67	35.82
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	23.58	21.36
PGSC0003DMT400047918	Potato	cytosol	21.77	19.96
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	2.49	12.94

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	ProteinID:CAA81749	ProteinID:CAA81749.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016829	GO:GO:0016847	GO:GO:0030170	GO:GO:0042218
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1BFB9	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400017039
PGSC:PGSC0003DMG400017039	EnsemblPlants:PGSC0003DMT400043903	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF28
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002951B52	EMBL:Z27235

Description

1-aminocyclopropane-1-carboxylate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400017039]

Coordinates

chr7:-:25011892..25013488

Molecular Weight (calculated)

50073.7 Da

IEP (calculated)

5.516

GRAVY (calculated)

-0.272

Length

441 amino acids

Sequence
(BLAST)

001: MAIEIEQRPT VVRLSNVATS DTHGEDSPYF AGWKAYDENP FDEVHNPSGV IQMGLAENQV SFDLLEEYLE KKKDDGVAEI SRFRENALFQ DYHGLVCFRK
101: AMATFMEQVR GGRARFDPDT VVITAGATAA NELLTFILAD PGDALLVPTP YYPGFDRDLR WRTGVKIIPV HCDSSNNFQV TLQALEEAYK DAESNNIKVR
201: GVLITNPSNP LGTTVQRCVL EEILEFVARK NIHLVSDEIY SGSAFCCSEF VSIAEILESR NYKDSERVHI VYSLSKDLGL PGFRVGTIYS YNDKVVTTAR
301: RMSSFTLISS QTQQLLASML SDEKFTENYI KKNRERLRRR YEMMIEGLRS AGIECLRGNA GLFCWMNLST LLEKPTKECE LEVWNTILHE VKLNISPGSS
401: CHCSEPGWFR VCFANMSENT LEIALKRIHH FMETRGILQK Y

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.