Factsheet for PGSC0003DMT400012600

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08040.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT4G08040.1	PGSC0003DMT400069203	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077410.2.1	Tomato	cytosol	95.5	94.69
VIT_18s0001g08520.t01	Wine grape	nucleus	67.88	67.88
PGSC0003DMT400055203	Potato	cytosol	67.24	66.95
PGSC0003DMT400008587	Potato	cytosol	65.95	66.81
KRH61460	Soybean	cytosol	49.46	66.0
PGSC0003DMT400008605	Potato	cytosol	59.53	65.72
PGSC0003DMT400013977	Potato	cytosol	50.54	63.27
KRH52156	Soybean	cytosol	63.17	63.17
AT4G08040.1	Thale cress	cytosol	62.1	63.04
CDY34015	Canola	cytosol	61.67	62.07
Bra000637.1-P	Field mustard	cytosol	61.46	61.85
CDX83146	Canola	cytosol	61.24	61.64
PGSC0003DMT400043903	Potato	cytosol	51.39	54.42
PGSC0003DMT400000771	Potato	cytosol	50.32	54.15
PGSC0003DMT400084228	Potato	cytosol	17.99	48.0
PGSC0003DMT400032096	Potato	cytosol	48.82	47.11
PGSC0003DMT400012864	Potato	cytosol	48.82	47.01
PGSC0003DMT400000553	Potato	cytosol	48.82	46.91
PGSC0003DMT400031769	Potato	cytosol	48.61	46.8
PGSC0003DMT400014932	Potato	cytosol	47.75	45.88
PGSC0003DMT400055753	Potato	vacuole	36.19	44.47
PGSC0003DMT400092723	Potato	cytosol	9.64	38.46
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	38.97	36.11
PGSC0003DMT400010000	Potato	plastid	39.4	33.45
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	19.91	19.1
PGSC0003DMT400047918	Potato	cytosol	18.63	18.09
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	2.57	14.12

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016847
GO:GO:0030170	GO:GO:0042218	InterPro:IPR015421	InterPro:IPR015422	UniProt:M1A1I1	InterPro:NHTrfase_class1_PyrdxlP-BS
PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400004925	PGSC:PGSC0003DMG400004925	EnsemblPlants:PGSC0003DMT400012600	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF10	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI000296DD13	SEG:seg	:	:	:	:

Description

1-aminocyclopropane-1-carboxylate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400004925]

Coordinates

chr4:-:66465143..66468232

Molecular Weight (calculated)

53015.8 Da

IEP (calculated)

9.133

GRAVY (calculated)

-0.294

Length

467 amino acids

Sequence
(BLAST)

001: MAMCKSHGQD SSYFIGWQEY EKNPYDPLQN PSGIIQMGLA ENQLSFDLLE SWLARNQDVI QFRENGGSMF RDLALFQDYH GLQAFKNVLV SFMAEIRRKK
101: VKFDPKNLVL TAGSTSANEI LIFCLAEPGE ALLIPTPYYP GFDRDLKWRT GAEIVPIHCY SSNNFRITES ALEEAYEQAQ KRNLTVKAVF ITNPSNPLGT
201: TMSRNELNIL ITFAMTKNIH IVSDEIYAGT VFDSPKFISI MEALIDRKLE KSKMWNQVHI VSSLSKDLGL PGFRVGMIYS NNETLIAAAT KMSSFGLISS
301: QTQYLLSKIL GDRRFIKRYI KENKKQLIHR REMLASGLAN SGIECLESNA GLFCFVDMRD LLKSNTFEAE MELWKKIISN VGLNVSPGSS CHCSEPGWFR
401: VCFANMSKET LDLAMQRINN FVNSDRDIRQ NLRQQPPRSV RAAGSRRRRT IANWVVKLSS GDGRTDR

Best Arabidopsis Sequence Match ( AT4G37770.1 )
(BLAST)

001: MGLLSKKASC NTHGQDSSYF WGWEEYEKNP YDEIKNPDGI IQMGLAENQL SFDLIESWLA KNPDAANFQR EGQSIFRELA LFQDYHGLPS FKNAMADFMS
101: ENRGNRVSFN PNKLVLTAGA TPANETLMFC LADPGDAFLL PTPYYPGFDR DLKWRTGAEI VPIQCKSANG FRITKVALEE AYEQAQKLNL KVKGVLITNP
201: SNPLGTTTTR TELNHLLDFI SRKKIHLISD EIYSGTVFTN PGFISVMEVL KDRKLENTDV FDRVHIVYSL SKDLGLPGFR VGVIYSNDDF VVSAATKMSS
301: FGLISSQTQY LLSALLSDKT FTKNYLEENQ IRLKNRHKKL VSGLEAAGIE CLKSNAGLFC WVDMRHLLKS NTFEAEIELW KKIVYEVKLN ISPGSSCHCN
401: EPGWFRVCFA NLSEETLKVA LDRLKRFVDG PSPTRRSQSE HQRLKNLRKM KVSNWVFRLS FHDREPEER

Arabidopsis Description

ACS81-aminocyclopropane-1-carboxylate synthase-like protein [Source:UniProtKB/TrEMBL;Acc:Q56Y32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.