CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83146	Canola	cytosol	98.49	98.49
AT4G08040.1	Thale cress	cytosol	89.87	90.65
CDY66472	Canola	cytosol	60.34	69.48
CDX75675	Canola	cytosol	66.16	68.07
CDX69326	Canola	cytosol	67.03	66.31
KRH61460	Soybean	cytosol	49.78	66.0
CDY69462	Canola	cytosol	66.59	65.88
VIT_18s0001g08520.t01	Wine grape	nucleus	65.73	65.31
CDY23035	Canola	cytosol	65.3	65.02
CDY05953	Canola	cytosol	65.73	64.89
CDY02111	Canola	cytosol	65.73	64.89
CDY08163	Canola	cytosol	65.52	64.68
CDY25639	Canola	cytosol	64.87	63.5
CDX89520	Canola	cytosol	64.66	63.29
CDX81296	Canola	cytosol	59.7	63.1
CDY18674	Canola	cytosol	59.48	62.87
Solyc04g077410.2.1	Tomato	cytosol	62.72	61.78
PGSC0003DMT400012600	Potato	cytosol	62.07	61.67
KRH52156	Soybean	cytosol	62.07	61.67
CDY42751	Canola	cytosol	54.74	56.32
CDX89355	Canola	cytosol	54.31	56.25
CDX94359	Canola	cytosol	54.09	56.03
CDY71142	Canola	cytosol	54.09	56.03
CDY72652	Canola	cytosol	23.71	54.73
CDX92755	Canola	cytosol	48.92	54.57
CDY13251	Canola	cytosol	52.37	49.49
CDX86796	Canola	cytosol	51.94	49.39
CDX90035	Canola	cytosol	46.98	48.77
CDY15174	Canola	cytosol	51.94	48.59
CDY11360	Canola	cytosol	49.14	48.2
CDY65356	Canola	cytosol	48.71	47.78
CDY46931	Canola	mitochondrion, plastid	38.79	36.0
CDX91604	Canola	mitochondrion, plastid	38.58	35.8
CDY43579	Canola	cytosol, mitochondrion, plastid	14.44	34.9
CDY45474	Canola	cytosol	35.34	31.36
CDY45965	Canola	cytosol	35.78	30.57
CDX68271	Canola	mitochondrion	5.82	21.09
CDX91708	Canola	peroxisome	16.81	19.35
CDY25780	Canola	peroxisome	16.59	19.11
CDY41452	Canola	peroxisome	18.75	18.2
CDY04729	Canola	cytosol	18.53	17.99
CDY44130	Canola	cytosol	18.53	17.99
CDY61225	Canola	peroxisome	17.89	17.26
CDY66294	Canola	cytosol	17.89	17.26
CDY26256	Canola	mitochondrion	18.97	16.39
CDY48485	Canola	plastid	18.97	16.3
CDY21752	Canola	mitochondrion	18.97	16.09
CDX83914	Canola	mitochondrion	18.75	16.08
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	4.53	16.03
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	4.53	16.03
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	4.53	16.03
CDX81815	Canola	mitochondrion	18.97	16.03
CDY50645	Canola	cytosol	7.33	15.74
CDX96776	Canola	mitochondrion	18.32	15.68
CDY03822	Canola	cytosol	4.31	15.5
CDY12474	Canola	peroxisome, plastid	17.89	15.46
CDX83913	Canola	cytosol, nucleus, peroxisome	3.88	14.06
CDX68272	Canola	nucleus	3.23	13.51
CDX86161	Canola	cytosol	3.45	12.12
CDY25781	Canola	cytosol	1.29	10.34

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	GO:A0A078H639	UniProt:A0A078H639	InterPro:Aminotransferase_I/II
EnsemblPlants:CDY34015	ProteinID:CDY34015	ProteinID:CDY34015.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00055876001	InterPro:IPR015421
InterPro:IPR015422	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795
PANTHER:PTHR43795:SF29	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0004EE7F22
SEG:seg	:	:	:	:	:

Description

BnaC03g28000DBnaC03g28000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H639]

Coordinates

chrLK032326:-:126300..128113

Molecular Weight (calculated)

52296.5 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.320

Length

464 amino acids

Sequence
(BLAST)

001: MLSSKVINES HGQDSSYFLG WQEYEKNPFD ETLNPSGIVQ MGLAENQLSF DLIESWLDDH PEVLGLKKNE ESVFKHLALF QDYHGLPAFK DAMAKFMEKI
101: RGSKVKFNTN KMVLTAGSTS ANETLMFCLA NPGDAFLIPA PYYPGFDRDL KWRTGVEIVP IHCVSSNGYK ITKEALDEAY ERAHKLNLNV KGVLITNPSN
201: PLGTSTTRDE LDLLLTFTSA KKIHMVSDEI YSGTVFDSPE FTSVLEVAKD KNMDLDEKIH VVYSLSKDLG LPGFRVGLIY SNNENVVSAA TKMSSFGLIS
301: SQTQHLLANL LSDERFTTKY LEVNRKRLRE RRDRLVSGLK KAGIGCLKSN GGLFCWVDLR HLLKSNTFEA EHSLWTKIVC EVGLNISPGS SCHSDEPGWF
401: RVCFANMSDQ TLEVAMDRVH GFVEAMVMNT NLGKQKRTMW DSRRRSLINK WVSKLSSVQC ESER

Best Arabidopsis Sequence Match ( AT4G08040.1 )
(BLAST)

001: MLSSKVVGDS HGQDSSYFLG WQEYEKNPFH ESFNTSGIVQ MGLAENQLSF DLIEKWLEEH PEVLGLKKND ESVFRQLALF QDYHGLPAFK DAMAKFMGKI
101: RENKVKFDTN KMVLTAGSTS ANETLMFCLA NPGDAFLIPA PYYPGFDRDL KWRTGVEIVP IHCVSSNGYK ITEDALEDAY ERALKHNLNV KGVLITNPSN
201: PLGTSTTREE LDLLLTFTST KKIHMVSDEI YSGTVFDSPE FTSVLEVAKD KNMGLDGKIH VVYSLSKDLG LPGFRVGLIY SNNEKVVSAA TKMSSFGLIS
301: SQTQHLLANL LSDERFTTNY LEENKKRLRE RKDRLVSGLK EAGISCLKSN AGLFCWVDLR HLLKSNTFEA EHSLWTKIVC EVGLNISPGS SCHCDEPGWF
401: RVCFANMSDQ TMEVAMDRVK GFVDNNNGGK QKRTMWDTRR RSLINKWVSK LSSVTCESER

Arabidopsis Description

ACS111-aminocyclopropane-1-carboxylate synthase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9U6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.