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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 2
  • peroxisome 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome, plastid
Any Predictor:cytosol, peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:peroxisome
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:peroxisome
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G23310.1 CDY32970 AT5G42980.1 15352244
AT1G23310.1 CDY43592 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25781 Canola cytosol 10.24 94.83
CDY04729 Canola cytosol 83.24 93.51
CDY44130 Canola cytosol 83.24 93.51
CDY41452 Canola peroxisome 82.87 93.1
CDY25780 Canola peroxisome 69.83 93.05
CDX91708 Canola peroxisome 69.27 92.31
AT1G23310.1 Thale cress cytosol 81.56 91.06
CDX91589 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 21.79 89.31
CDX86159 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 21.79 89.31
CDX88411 Canola cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 21.79 89.31
CDY61225 Canola peroxisome 79.33 88.57
CDY66294 Canola cytosol 78.58 87.73
PGSC0003DMT400042202 Potato cytosol, mitochondrion, peroxisome, plastid 13.78 87.06
VIT_00s0225g00130.t01 Wine grape cytosol 73.93 82.54
KRH69622 Soybean cytosol 73.18 81.7
KRH74536 Soybean cytosol 73.0 81.5
Solyc01g007940.2.1 Tomato cytosol 71.32 80.97
PGSC0003DMT400047918 Potato cytosol 72.25 80.67
Solyc05g013380.2.1 Tomato extracellular, nucleus, plastid 72.07 80.46
GSMUA_Achr6P29540_001 Banana cytosol 71.88 80.25
GSMUA_Achr8P15810_001 Banana cytosol 71.32 79.63
TraesCS2A01G261600.1 Wheat peroxisome 70.39 78.91
TraesCS2B01G280600.1 Wheat plastid 70.39 78.91
Os07t0108300-01 Rice extracellular, nucleus, plasma membrane 71.14 78.76
Zm00001d007937_P001 Maize mitochondrion 68.53 76.83
KXG34265 Sorghum cytosol 68.16 76.57
HORVU2Hr1G063740.6 Barley peroxisome, vacuole 67.97 75.1
TraesCS2D01G262400.2 Wheat cytosol 65.74 70.74
CDY03822 Canola cytosol 11.92 49.61
CDX96776 Canola mitochondrion 44.69 44.28
CDX83914 Canola mitochondrion 44.51 44.18
CDY26256 Canola mitochondrion 43.95 43.95
CDX68271 Canola mitochondrion 10.43 43.75
CDY48485 Canola plastid 43.76 43.52
CDY21752 Canola mitochondrion 43.95 43.14
CDX81815 Canola mitochondrion 43.95 42.99
CDY50645 Canola cytosol 15.27 37.96
CDX83913 Canola cytosol, nucleus, peroxisome 8.19 34.38
CDX68272 Canola nucleus 6.33 30.63
CDY71142 Canola cytosol 17.32 20.76
CDX94359 Canola cytosol 17.13 20.54
CDX92755 Canola cytosol 15.83 20.43
CDX89355 Canola cytosol 16.95 20.31
CDY42751 Canola cytosol 16.95 20.18
CDY66472 Canola cytosol 14.71 19.6
CDY05953 Canola cytosol 17.13 19.57
CDY08163 Canola cytosol 16.95 19.36
CDY02111 Canola cytosol 16.95 19.36
CDY23035 Canola cytosol 16.57 19.1
CDX75675 Canola cytosol 16.01 19.07
CDX86161 Canola cytosol 4.66 18.94
CDY25639 Canola cytosol 16.57 18.78
CDX89520 Canola cytosol 16.57 18.78
CDX69326 Canola cytosol 16.39 18.76
CDY18674 Canola cytosol 15.08 18.45
CDX81296 Canola cytosol 15.08 18.45
CDY72652 Canola cytosol 6.89 18.41
CDY46931 Canola mitochondrion, plastid 17.13 18.4
CDX91604 Canola mitochondrion, plastid 17.13 18.4
CDY69462 Canola cytosol 16.01 18.34
CDY65356 Canola cytosol 16.01 18.18
CDY13251 Canola cytosol 16.57 18.13
CDX86796 Canola cytosol 16.39 18.03
CDY11360 Canola cytosol 15.83 17.97
CDX83146 Canola cytosol 15.46 17.89
CDY34015 Canola cytosol 15.46 17.89
CDY45965 Canola cytosol 18.06 17.86
CDY45474 Canola cytosol 17.32 17.78
CDX90035 Canola cytosol 14.71 17.67
CDY15174 Canola cytosol 16.2 17.54
CDY43579 Canola cytosol, mitochondrion, plastid 5.03 14.06
Protein Annotations
MapMan:1.3.3.1Gene3D:3.40.640.10Gene3D:3.90.1150.10GO:A0A078FHI7UniProt:A0A078FHI7InterPro:Aminotransferase_I/II
EnsemblPlants:CDY12474ProteinID:CDY12474ProteinID:CDY12474.1GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0030170EnsemblPlantsGene:GSBRNA2T00061779001InterPro:IPR015421
InterPro:IPR015422PFAM:PF00155PANTHER:PTHR11751PANTHER:PTHR11751:SF373InterPro:PyrdxlP-dep_TrfaseInterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_majorSUPFAM:SSF53383UniParc:UPI0004EE9598SEG:seg::
Description
BnaC07g13140DBnaC07g13140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHI7]
Coordinates
chrLK032023:+:42257..46934
Molecular Weight (calculated)
59634.5 Da
IEP (calculated)
7.408
GRAVY (calculated)
-0.247
Length
537 amino acids
Sequence
(BLAST)
001: MFQNLSSDTT TKKSDKASTA RLRGNVAVRL IGQPLQPFDR PSIPSNLRIH HEPESTSLTD RLGGTYSLEY DSLNENVKKC QYAVRGELYL RASELQKEGK
101: KIIFTNVGNP HALGQKPLTF PRQVVALCQA PFLLDDPNVG MLFSADAIER AKHYLSLTSG GLGAYKVAEF IQRRLSASYL SYHNDPELIF LTDGASKGVM
201: QILNCVIRGA GDGILVPVPQ YPLYSATISL LGGSLVPYYL DESENWGLDV NNLRQSVSQA RSQGISVRAM VIINPGNPTG QCLSEANLRE ILRFCYSEKL
301: VLLGDEVYQQ NIYQDERPFI SSKKVLMDMG SPFSKEVQLV SFHTVSKGYW GECGQRGGYF EMTNFPPRVV EEIYKVASIA LSPNVSAQIF MGLMVSSPKP
401: GDISYDQFTR ESKGILESLR RRAKIMTDGF NSCKNAVCNF TEGAMYSFPQ IQLPPGALQA AKQAGKVPDV FYCLKLLEAT GISTVPGSGF GQKEGVFHLR
501: TTILPAEEEM PEIMDSFKKF NDEFMTQYDN NFGYSRM
Best Arabidopsis Sequence Match ( AT1G23310.1 )
(BLAST)
001: MALKALDYDT LNENVKKCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVALCQAPF LLDDPNVGML FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI QRRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGNGDGILV PVPQYPLYSA TISLLGGTLV PYYLDESENW GLDVANLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILKFCY NEKLVLLGDE VYQQNIYQDE RPFISSKKVL MEMGSPFSKE VQLVSFHTVS KGYWGECGQR
301: GGYFEMTNLP PRVVEEIYKV ASIALSPNVS AQIFMGLMVN PPKPGDISYD QFARESKGIL ESLRRRARLM TDGFNSCKNV VCNFTEGAMY SFPQIRLPTG
401: ALQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EDEMPEIMDS FKKFNDEFMT QYDNNFGYSK M
Arabidopsis Description
GGAT1Glutamate--glyoxylate aminotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR30]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.