Factsheet for Zm00001d007937_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23310.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34265	Sorghum	cytosol	90.81	91.0
Os07t0108300-01	Rice	extracellular, nucleus, plasma membrane	89.98	88.87
TraesCS2B01G280600.1	Wheat	plastid	88.1	88.1
TraesCS2A01G261600.1	Wheat	peroxisome	88.1	88.1
VIT_00s0225g00130.t01	Wine grape	cytosol	84.76	84.41
GSMUA_Achr8P15810_001	Banana	cytosol	84.76	84.41
GSMUA_Achr6P29540_001	Banana	cytosol	84.34	83.99
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	14.82	83.53
HORVU2Hr1G063740.6	Barley	peroxisome, vacuole	84.34	83.13
CDY25781	Canola	cytosol	10.02	82.76
PGSC0003DMT400047918	Potato	cytosol	82.46	82.12
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	81.63	81.29
CDX91589	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.13	80.92
CDX88411	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.13	80.92
CDX86159	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	22.13	80.92
AT1G70580.1	Thale cress	cytosol, nucleus, peroxisome	81.21	80.87
CDY04729	Canola	cytosol	80.58	80.75
CDY44130	Canola	cytosol	80.58	80.75
Bra024580.1-P	Field mustard	cytosol	80.58	80.75
KRH69622	Soybean	cytosol	81.0	80.67
CDY61225	Canola	peroxisome	80.79	80.46
AT1G23310.1	Thale cress	cytosol	80.79	80.46
Solyc01g007940.2.1	Tomato	cytosol	79.33	80.34
Bra016202.1-P	Field mustard	cytosol	80.79	80.29
KRH74536	Soybean	cytosol	80.58	80.25
Bra016353.1-P	Field mustard	cytosol	79.96	80.13
CDY41452	Canola	peroxisome	79.54	79.71
CDY66294	Canola	cytosol	79.96	79.63
Bra012371.1-P	Field mustard	cytosol	75.37	79.17
TraesCS2D01G262400.2	Wheat	cytosol	82.25	78.96
CDY25780	Canola	peroxisome	66.18	78.66
CDX91708	Canola	peroxisome	65.97	78.41
CDY12474	Canola	peroxisome, plastid	76.83	68.53
Zm00001d003953_P001	Maize	cytosol	10.86	58.43
Zm00001d044135_P001	Maize	cytosol	6.26	53.57
Zm00001d030557_P001	Maize	cytosol, extracellular	51.77	51.45
Bra009959.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.91	50.0
Zm00001d022152_P001	Maize	mitochondrion	50.1	44.36
Zm00001d020590_P009	Maize	cytosol	44.68	43.23
Zm00001d006875_P001	Maize	plastid	49.9	42.75
Zm00001d032984_P001	Maize	mitochondrion	24.63	36.09
Zm00001d014258_P002	Maize	cytosol	51.57	27.94
Zm00001d008277_P001	Maize	cytosol	24.22	27.23
CDX86161	Canola	cytosol	5.85	21.21
Zm00001d002592_P002	Maize	cytosol	18.58	18.35
Zm00001d039487_P001	Maize	mitochondrion	17.54	18.18
Zm00001d033862_P001	Maize	cytosol	17.54	17.32
Zm00001d026060_P003	Maize	cytosol	17.75	16.67
Zm00001d045479_P001	Maize	cytosol, peroxisome, plastid	18.58	16.12

Protein Annotations

MapMan:1.3.3.1	EntrezGene:100279700	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	UniProt:A0A1D6FA18	InterPro:Aminotransferase_I/II
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422	ProteinID:ONM27962.1	PFAM:PF00155
PANTHER:PTHR11751	PANTHER:PTHR11751:SF373	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
UniParc:UPI000160B771	EnsemblPlantsGene:Zm00001d007937	EnsemblPlants:Zm00001d007937_P001	EnsemblPlants:Zm00001d007937_T001	SEG:seg	:

Description

alanine amino transferase8 alanine amino transferase8

Coordinates

chr2:-:243428038..243432761

Molecular Weight (calculated)

53572.8 Da

IEP (calculated)

8.565

GRAVY (calculated)

-0.232

Length

479 amino acids

Sequence
(BLAST)

001: MARRRPMDYE ELNEKVKKAQ YAVRGELYLR ASQLQKEGKK IIFTNVGNPH ALGQKPLTFP RQVVALCQAP FLLDDPNVGL MFPPDAIVRA KRYLAMAPGG
101: LGAYSDARGI PGIRKEVADF IHKRDGYPSD PELIYLTDGA SKGVMQMLNA IIRNERDGIL VPVPQYPLYS AIISLFGGSL VPYYLEEEAN WNLDFANIRQ
201: AVAEARSKGI TVRATVIINP GNPTGQCLSE ANIRELVRYC YHENLVLLAD EVYQQNVYQD ERPFISARKV MFDMGPPISR EVQLVSFHTV SKGYWGECGQ
301: RGGYFEMTNL PPKTVDEIYK VASIVLSPNV PGQIFMGVMV NPPKPGDISY PKFTAESKSI LESLRRRARM MTDGFNSCRN VVCNFTEGAM YSFPQIQLPA
401: RAIEAAKRAG KAADVFYCLK LLEATGISTV PGSGFGQKEG VFHLRTTILP AEEDFPTIMS SFKKFNDSFM EQYEGYSRM

Best Arabidopsis Sequence Match ( AT1G70580.4 )
(BLAST)

001: MSLKALDYES LNENVKNCQY AVRGELYLRA SELQKEGKKI IFTNVGNPHA LGQKPLTFPR QVVSLCQAPF LLDDPNVGMI FPADAIARAK HYLSLTSGGL
101: GAYSDSRGLP GVRKEVAEFI ERRDGYPSDP ELIFLTDGAS KGVMQILNCV IRGQKDGILV PVPQYPLYSA TISLLGGTLV PYYLEESENW GLDVNNLRQS
201: VAQARSQGIT VRAMVIINPG NPTGQCLSEA NIREILRFCC DERLVLLGDE VYQQNIYQDE RPFISSKKVL MDMGAPISKE VQLISFHTVS KGYWGECGQR
301: GGYFEMTNIP PRTVEEIYKV ASIALSPNVS AQIFMGLMVS PPKPGDISYD QFVRESKGIL ESLRRRARMM TDGFNSCKNV VCNFTEGAMY SFPQIKLPSK
401: AIQAAKQAGK VPDVFYCLKL LEATGISTVP GSGFGQKEGV FHLRTTILPA EEEMPEIMDS FKKFNDEFMS QYADNFGYSR M

Arabidopsis Description

GGAT2Glutamate--glyoxylate aminotransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7E9]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.