Factsheet for Zm00001d006875_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038652_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G17290.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003953_P001	Maize	cytosol	15.03	94.38
Zm00001d044135_P001	Maize	cytosol	8.94	89.29
Os07t0617800-01	Rice	mitochondrion	52.41	89.06
Zm00001d022152_P001	Maize	mitochondrion	85.69	88.54
TraesCS2A01G167500.1	Wheat	mitochondrion	81.93	82.37
TraesCS2D01G175200.1	Wheat	golgi	81.75	82.05
TraesCS2B01G193600.1	Wheat	mitochondrion	81.93	81.64
HORVU2Hr1G030820.1	Barley	mitochondrion	81.22	81.51
Zm00001d030557_P001	Maize	cytosol, extracellular	66.37	76.97
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	64.94	74.54
Solyc03g123600.2.1	Tomato	cytosol	62.79	72.52
VIT_09s0002g00340.t01	Wine grape	mitochondrion	68.16	72.43
Bra025984.1-P	Field mustard	cytosol, mitochondrion	66.37	69.09
AT1G17290.1	Thale cress	mitochondrion	67.08	69.06
KRH06285	Soybean	mitochondrion	66.19	69.03
CDX96776	Canola	mitochondrion	66.73	68.82
CDY26256	Canola	mitochondrion	66.01	68.72
Bra016607.1-P	Field mustard	mitochondrion	66.55	68.63
CDX83914	Canola	mitochondrion	66.37	68.58
AT1G72330.3	Thale cress	mitochondrion	67.62	68.35
CDY48485	Canola	plastid	66.01	68.33
KRH47719	Soybean	endoplasmic reticulum	65.83	68.02
CDY21752	Canola	mitochondrion	66.19	67.64
CDX81815	Canola	mitochondrion	66.37	67.58
Bra026675.1-P	Field mustard	mitochondrion	66.19	67.52
Solyc06g063090.2.1	Tomato	extracellular	65.3	67.34
CDX68271	Canola	mitochondrion	13.95	60.94
Zm00001d032984_P001	Maize	mitochondrion	35.42	60.55
Zm00001d020590_P009	Maize	cytosol	52.95	59.8
Solyc03g123610.2.1	Tomato	plastid	62.61	57.76
CDY50645	Canola	cytosol	19.86	51.39
Zm00001d007937_P001	Maize	mitochondrion	42.75	49.9
CDX83913	Canola	cytosol, nucleus, peroxisome	10.55	46.09
Zm00001d014258_P002	Maize	cytosol	64.94	41.06
Zm00001d008277_P001	Maize	cytosol	30.05	39.44
CDX68272	Canola	nucleus	6.62	33.33
Zm00001d039487_P001	Maize	mitochondrion	16.1	19.48
Zm00001d033862_P001	Maize	cytosol	16.64	19.18
Zm00001d002592_P002	Maize	cytosol	15.03	17.32
Zm00001d045479_P001	Maize	cytosol, peroxisome, plastid	16.99	17.21
Zm00001d026060_P003	Maize	cytosol	15.21	16.67

Protein Annotations

EntrezGene:100279149	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	UniProt:A0A1D6F1Q8	InterPro:Aminotransferase_I/II
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0009058	GO:GO:0016740	GO:GO:0030170	InterPro:IPR015421	InterPro:IPR015422
ProteinID:ONM25374.1	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1
InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0008423A37	EnsemblPlantsGene:Zm00001d006875	EnsemblPlants:Zm00001d006875_P001	EnsemblPlants:Zm00001d006875_T001
SEG:seg	:	:	:	:	:

Description

alanine aminotransferase10 alanine aminotransferase10

Coordinates

chr2:-:218327505..218332462

Molecular Weight (calculated)

61031.1 Da

IEP (calculated)

8.018

GRAVY (calculated)

-0.209

Length

559 amino acids

Sequence
(BLAST)

001: MHRFAADRAR RAVAASLRGA ASRAAAAPSR HAPAPRHPTS PVGAAAPVAA AAMARAAMST AVAGVPPPVS LDTISPKVPP VSLDTINPKV LKCQFAVRGE
101: IVTRAQKLQQ ELQRNPESLP FDEILYCNIG NPHSIGQQPV TYFREVLSLC ENPALLDKSE THALYRSDAI ERARKILDKI PGRATGAYSH SQGIKGLRDE
201: IAAGIAARDG FHASADNIFL TDGASPAVHM ILQLLIRSEK DGILCPIPQY PLYSASIALH GGSLVPYFLD EETGWALEVD ELKKQLEEAR SKGISVRALV
301: VINPGNPTGQ VLTEENQKKI VEFCKNERLV LLADEVYQEN IYVEDKQFHS FKKIARSLGY TDDDLPLVSF QSISKGYYGE CGKRGGYMEI TGFSPQVRDQ
401: IYKMASINLC SNITGQILAS LVMNPPKAGD ESFESFRLER DGILSSLGRR AKALEEAFNS LEGITCNKAE GAMYLFPRLH LPRKAIGAAQ AAGTAPDAYY
501: AKRLLEATGI VFVPGSGFGQ VPGTWHIRST ILPQEDKIPG IVSRFKEFHD KFMDEFRDY

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.