Factsheet for Solyc06g063090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
unclear: 26455813
extracellular: 29876421

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	87.08	96.92
Solyc03g123600.2.1	Tomato	cytosol	75.46	84.5
Os07t0617800-01	Rice	mitochondrion	49.45	81.46
VIT_09s0002g00340.t01	Wine grape	mitochondrion	78.23	80.61
KRH06285	Soybean	mitochondrion	77.31	78.17
Bra025984.1-P	Field mustard	cytosol, mitochondrion	76.94	77.65
GSMUA_Achr2P07320_001	Banana	cytosol	69.74	77.62
Zm00001d003953_P001	Maize	cytosol	12.73	77.53
KRH47719	Soybean	endoplasmic reticulum	77.31	77.45
Zm00001d030557_P001	Maize	cytosol, extracellular	68.82	77.39
CDY26256	Canola	mitochondrion	76.57	77.28
CDX83914	Canola	mitochondrion	76.94	77.08
CDY48485	Canola	plastid	76.75	77.04
CDX96776	Canola	mitochondrion	76.94	76.94
TraesCS1A01G085600.1	Wheat	cytosol, golgi	68.27	76.76
TraesCS1B01G102700.1	Wheat	golgi, plastid	68.27	76.76
Bra016607.1-P	Field mustard	mitochondrion	76.57	76.57
CDY21752	Canola	mitochondrion	77.12	76.42
GSMUA_Achr11P...	Banana	mitochondrion	71.59	76.38
TraesCS1D01G086700.1	Wheat	cytosol	56.64	76.37
Os10t0390500-01	Rice	cytosol, plasma membrane, plastid	67.9	76.19
CDX81815	Canola	mitochondrion	77.12	76.14
Bra026675.1-P	Field mustard	mitochondrion	76.75	75.91
GSMUA_Achr10P...	Banana	mitochondrion	73.06	75.72
AT1G17290.1	Thale cress	mitochondrion	75.46	75.32
KXG38638	Sorghum	cytosol	68.63	75.3
AT1G72330.3	Thale cress	mitochondrion	75.83	74.32
EER99708	Sorghum	mitochondrion	71.77	71.9
Zm00001d022152_P001	Maize	mitochondrion	71.22	71.35
Zm00001d044135_P001	Maize	cytosol	7.2	69.64
Solyc03g123610.2.1	Tomato	plastid	77.31	69.14
Os03t0183600-00	Rice	extracellular	61.25	68.31
TraesCS2D01G175200.1	Wheat	golgi	69.0	67.15
TraesCS2A01G167500.1	Wheat	mitochondrion	68.82	67.09
TraesCS2B01G193600.1	Wheat	mitochondrion	69.0	66.67
HORVU2Hr1G030820.1	Barley	mitochondrion	68.45	66.61
Zm00001d006875_P001	Maize	plastid	67.34	65.3
HORVU1Hr1G018540.17	Barley	cytosol, golgi, plastid	66.42	63.94
Zm00001d032984_P001	Maize	mitochondrion	31.55	52.29
Solyc01g007940.2.1	Tomato	cytosol	44.1	50.53
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	44.1	49.69
Zm00001d014258_P002	Maize	cytosol	68.63	42.08
Zm00001d008277_P001	Maize	cytosol	27.12	34.51
Solyc02g063540.1.1	Tomato	cytosol	12.18	23.24
Solyc07g026900.1.1	Tomato	cytosol	18.82	23.13
Solyc12g008740.1.1	Tomato	cytosol	18.08	22.58
Solyc02g091990.2.1	Tomato	cytosol	19.19	22.17
Solyc03g043890.2.1	Tomato	cytosol	19.19	22.08
Solyc08g081550.2.1	Tomato	cytosol	17.71	20.34
Solyc08g081540.2.1	Tomato	cytosol	17.9	20.08
Solyc05g050010.2.1	Tomato	cytosol	16.97	19.33
Solyc01g095080.2.1	Tomato	cytosol	17.16	19.18
Solyc12g056180.1.1	Tomato	cytosol	16.61	19.03
Solyc04g077410.2.1	Tomato	cytosol	16.42	18.9
Solyc03g007070.2.1	Tomato	cytosol	18.63	18.88
Solyc08g008100.2.1	Tomato	nucleus	12.55	18.63
Solyc08g079750.2.1	Tomato	plastid	17.9	17.7
Solyc08g008110.2.1	Tomato	cytosol, nucleus	2.4	12.87
Os10t0390701-00	Rice	cytosol	1.66	8.33

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	InterPro:Aminotransferase_I/II	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170
InterPro:IPR015421	InterPro:IPR015422	UniProt:K4C740	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc06g063090.2	EnsemblPlants:Solyc06g063090.2.1
UniParc:UPI0002766B44	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:39844895..39849318

Molecular Weight (calculated)

59365.9 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.177

Length

542 amino acids

Sequence
(BLAST)

001: MRRFISHKTI NLISKTTTST ISSSSSPNSP SLSPNSPLNS LLRFFSALPA YSPDSMASDY SATHITVDNI NPKVLKCEYA VRGEIVSIAQ TLQQRLKDNP
101: GSHPFDEILY CNIGNPQALA QQPITFFREV LALCDHPSIL DKSETQGLFS ADAIERAFQI LEQIPGRATG AYSHSQGIKG LRDTIASGMG ARDGFPADPN
201: DLFLTDGASP AVHMMMQLLI RSENDGILCP IPQYPLYSAS IALHGGTLVP YYLDEQTGWG LEISELEHQL KTAKSKGIDV RALVVINPGN PTGQVLGEAN
301: QREIVEFCRK EGLVLLADEV YQENVYVPDK KFHSFKKVSR SMGYGETDIT LVSFQSVSKG FYGECGKRGG YMEITGFSPE VREQIYKLAS VNLCSNISGQ
401: ILASLIMSPP KVGDESYESF SAEKEAILSS LARRAKTLED ALNSLEGVTC NRAEGAMYLF PCINLPDKAI KAAEAAKTAP DAFYAKHLLN ATGIVVVPGS
501: GFRQVPGTWH FRCTILPQEE KIPAIVSRLT EFHKKFMDEF RG

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.