Factsheet for Solyc03g123610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g123600.2.1	Tomato	cytosol	64.52	80.79
Zm00001d003953_P001	Maize	cytosol	11.39	77.53
Solyc06g063090.2.1	Tomato	extracellular	69.14	77.31
VIT_09s0002g00340.t01	Wine grape	mitochondrion	66.5	76.62
Os07t0617800-01	Rice	mitochondrion	40.76	75.08
KRH06285	Soybean	mitochondrion	66.17	74.81
Zm00001d030557_P001	Maize	cytosol, extracellular	59.24	74.48
KRH47719	Soybean	endoplasmic reticulum	66.34	74.31
GSMUA_Achr2P07320_001	Banana	cytosol	59.41	73.92
GSMUA_Achr10P...	Banana	mitochondrion	63.37	73.42
Bra025984.1-P	Field mustard	cytosol, mitochondrion	64.36	72.63
TraesCS1A01G085600.1	Wheat	cytosol, golgi	57.76	72.61
TraesCS1B01G102700.1	Wheat	golgi, plastid	57.76	72.61
GSMUA_Achr11P...	Banana	mitochondrion	60.73	72.44
CDY26256	Canola	mitochondrion	64.19	72.44
CDX83914	Canola	mitochondrion	64.52	72.27
Os10t0390500-01	Rice	cytosol, plasma membrane, plastid	57.59	72.26
KXG38638	Sorghum	cytosol	58.75	72.06
CDY48485	Canola	plastid	64.03	71.85
AT1G17290.1	Thale cress	mitochondrion	64.03	71.45
Zm00001d044135_P001	Maize	cytosol	6.6	71.43
CDX81815	Canola	mitochondrion	64.69	71.4
CDX96776	Canola	mitochondrion	63.86	71.4
TraesCS1D01G086700.1	Wheat	cytosol	47.36	71.39
Bra026675.1-P	Field mustard	mitochondrion	64.52	71.35
CDY21752	Canola	mitochondrion	64.36	71.3
Bra016607.1-P	Field mustard	mitochondrion	63.7	71.22
AT1G72330.3	Thale cress	mitochondrion	64.36	70.52
EER99708	Sorghum	mitochondrion	62.05	69.5
Zm00001d022152_P001	Maize	mitochondrion	60.73	68.02
HORVU2Hr1G030820.1	Barley	mitochondrion	60.4	65.71
TraesCS2D01G175200.1	Wheat	golgi	60.07	65.35
TraesCS2A01G167500.1	Wheat	mitochondrion	59.9	65.29
Os03t0183600-00	Rice	extracellular	52.31	65.23
TraesCS2B01G193600.1	Wheat	mitochondrion	60.07	64.88
HORVU1Hr1G018540.17	Barley	cytosol, golgi, plastid	58.25	62.7
Zm00001d006875_P001	Maize	plastid	57.76	62.61
Zm00001d032984_P001	Maize	mitochondrion	28.05	51.99
Solyc01g007940.2.1	Tomato	cytosol	38.28	49.05
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	38.12	48.02
Zm00001d014258_P002	Maize	cytosol	59.24	40.61
Zm00001d008277_P001	Maize	cytosol	23.1	32.86
Solyc02g063540.1.1	Tomato	cytosol	10.07	21.48
Solyc07g026900.1.1	Tomato	cytosol	15.35	21.09
Solyc12g008740.1.1	Tomato	cytosol	14.85	20.74
Solyc02g091990.2.1	Tomato	cytosol	15.68	20.26
Solyc03g043890.2.1	Tomato	cytosol	15.68	20.17
Solyc08g081550.2.1	Tomato	cytosol	15.68	20.13
Solyc01g095080.2.1	Tomato	cytosol	15.68	19.59
Solyc08g081540.2.1	Tomato	cytosol	15.51	19.46
Solyc08g008100.2.1	Tomato	nucleus	11.22	18.63
Solyc05g050010.2.1	Tomato	cytosol	14.52	18.49
Solyc12g056180.1.1	Tomato	cytosol	14.36	18.39
Solyc04g077410.2.1	Tomato	cytosol	13.53	17.41
Solyc03g007070.2.1	Tomato	cytosol	15.02	17.01
Solyc08g079750.2.1	Tomato	plastid	14.36	15.88
Solyc08g008110.2.1	Tomato	cytosol, nucleus	2.15	12.87
Os10t0390701-00	Rice	cytosol	0.17	0.93

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:4.1.3.1.1	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4BN60	PFAM:PF00155	PANTHER:PTHR11751	PANTHER:PTHR11751:SF466	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	EnsemblPlantsGene:Solyc03g123610.2	EnsemblPlants:Solyc03g123610.2.1	UniParc:UPI0002765BFD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:70411490..70418218

Molecular Weight (calculated)

66346.6 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.133

Length

606 amino acids

Sequence
(BLAST)

001: MRKVVKKLVN RKRSPFFTLR PLFAKSIMRR FVADKAKTLI NRSRTTCSSS FPPPIITSTS VLQRLTSSSS SSSQSTAVLR FLSTSSDSMA SDYSSTPVTL
101: NNVNPKVLKC EYAVRGEIVN LAQKLQQDLK ENPGSHPFDE ILYCNIGNPQ SLAQQPITFF REVLALCDHP LILDKSETQG LFSADSIERA FQILDQIPGR
201: ATGAYSHSQG IKGLRDTIAS GIEARDGFPA DPNDIFLTDG ASPAVHMMMQ LLIGSENDGI LCPIPQYPLY SASIALHGGT LVPYYLDEET GWGLEVSELE
301: NQLKTAKSKG INVRALAVIN PGNPTGQVLA EANQREIVEF CKKEGLVLLA DEVYQENVYV PEKQFHSFKK VARSMGFGEK DISLVSFQSV SKGFYGECGK
401: RGGYMEVTGF SPEIREQIYK VASVNLCSNI SGQILASLVM SPPKVGDESY ESFAAEKEGI LSSLARRAKT LEDAFSNLEG VTCNKAEGAM YLFPRINLPD
501: KAIKAAEEAK IAPDAFYARH LLNATGIVVV PGSGFGQSSV LERGILGAQY YRKKRRYQLL YLVLQNSISC SWMNSAAKES GVVKADIGLF GTYKLAIVYS
601: SILDLT

Best Arabidopsis Sequence Match ( AT1G72330.1 )
(BLAST)

001: MRRFLINQAK GLVDHSRRQH HHKSPSFLSP QPRPLASSPP ALSRFFSSTS EMSASDSTSS LPVTLDSINP KVLKCEYAVR GEIVNIAQKL QEDLKTNKDA
101: YPFDEIIYCN IGNPQSLGQL PIKFFREVLA LCDHASLLDE SETHGLFSTD SIDRAWRILD HIPGRATGAY SHSQGIKGLR DVIAAGIEAR DGFPADPNDI
201: FLTDGASPAV HMMMQLLLSS EKDGILSPIP QYPLYSASIA LHGGSLVPYY LDEATGWGLE ISDLKKQLEE ARSKGISVRA LVVINPGNPT GQVLAEENQR
301: DIVNFCKQEG LVLLADEVYQ ENVYVPDKKF HSFKKVARSL GYGEKDISLV SFQSVSKGYY GECGKRGGYM EVTGFTSDVR EQIYKMASVN LCSNISGQIL
401: ASLVMSPPKP GDDSYDSYMA ERDGILSSMA KRAKTLEDAL NSLEGVTCNR AEGAMYLFPR INLPQKAIEA AEAEKTAPDA FYCKRLLNAT GVVVVPGSGF
501: GQVPGTWHFR CTILPQEDKI PAIVNRLTEF HKSFMDEFRN

Arabidopsis Description

ALAAT2alanine aminotransferase 2 [Source:TAIR;Acc:AT1G72330]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.