Factsheet for Solyc08g008100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g095080.2.1
Solyc02g063540.1.1
Solyc02g091990.2.1
Solyc03g043890.2.1
Solyc05g050010.2.1
Solyc07g040990.2.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11280.1	Solyc02g063540.1.1	AT2G22810.1	14983000
AT4G11280.1	Solyc02g091990.2.1	AT2G22810.1	14983000
AT4G11280.1	Solyc03g043890.2.1	AT2G22810.1	14983000
AT4G11280.1	Solyc01g095080.2.1	AT3G61510.1	14983000
AT4G11280.1	Solyc05g050010.2.1	AT3G61510.1	14983000
AT4G11280.1	Solyc08g008100.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc08g081540.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc08g081550.2.1	AT4G11280.1	14983000
AT4G11280.1	Solyc12g056180.1.1	AT4G11280.1	14983000
AT4G11280.1	Solyc07g040990.2.1	AT4G26080.1	19705149

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014932	Potato	cytosol	87.95	66.05
Solyc08g081540.2.1	Tomato	cytosol	71.51	54.04
Solyc08g081550.2.1	Tomato	cytosol	66.3	51.27
VIT_02s0025g00360.t01	Wine grape	cytosol	63.84	48.44
Solyc12g056180.1.1	Tomato	cytosol	61.1	47.15
KRH59970	Soybean	cytosol	61.1	46.07
KRH41241	Soybean	cytosol	60.82	45.87
KRH27892	Soybean	cytosol	58.9	44.79
Solyc01g095080.2.1	Tomato	cytosol	59.18	44.54
AT4G11280.1	Thale cress	cytosol	58.63	43.23
CDY13251	Canola	cytosol	57.53	42.77
Bra035236.1-P	Field mustard	cytosol	56.44	42.21
CDX86796	Canola	cytosol	56.44	42.21
GSMUA_Achr4P29150_001	Banana	cytosol	55.34	41.56
Solyc05g050010.2.1	Tomato	cytosol	53.7	41.18
GSMUA_Achr4P24930_001	Banana	cytosol	53.7	40.75
GSMUA_AchrUn_...	Banana	cytosol	48.49	39.95
Zm00001d002592_P002	Maize	cytosol	51.23	38.56
Solyc12g008740.1.1	Tomato	cytosol	45.75	38.48
Solyc07g026900.1.1	Tomato	cytosol	46.3	38.32
EES12700	Sorghum	cytosol	51.51	38.29
Os04t0578000-01	Rice	cytosol	49.59	37.47
TraesCS2A01G396400.1	Wheat	cytosol	49.59	37.24
TraesCS2D01G394200.1	Wheat	cytosol	49.32	37.04
TraesCS2B01G414800.1	Wheat	cytosol	49.32	37.04
Zm00001d026060_P003	Maize	cytosol	50.68	36.27
Solyc02g091990.2.1	Tomato	cytosol	44.66	34.75
Solyc04g077410.2.1	Tomato	cytosol	43.29	33.55
Solyc03g043890.2.1	Tomato	cytosol	42.47	32.91
Solyc02g063540.1.1	Tomato	cytosol	21.92	28.17
HORVU2Hr1G094230.2	Barley	cytosol	32.33	24.38
Solyc03g007070.2.1	Tomato	cytosol	34.79	23.74
Solyc08g079750.2.1	Tomato	plastid	33.42	22.26
Solyc01g007940.2.1	Tomato	cytosol	17.26	13.32
Solyc05g013380.2.1	Tomato	extracellular, nucleus, plastid	16.99	12.89
Solyc03g123600.2.1	Tomato	cytosol	16.99	12.81
Solyc06g063090.2.1	Tomato	extracellular	18.63	12.55
Solyc03g123610.2.1	Tomato	plastid	18.63	11.22
Solyc08g008110.2.1	Tomato	cytosol, nucleus	2.47	8.91

Protein Annotations

Gene3D:3.40.640.10	Gene3D:3.90.1150.10	MapMan:50.4.4	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4CIU4	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00753	ScanProsite:PS00105
PANTHER:PTHR43795	PANTHER:PTHR43795:SF6	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc08g008100.2	EnsemblPlants:Solyc08g008100.2.1	UniParc:UPI000276CA62	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:2580112..2582839

Molecular Weight (calculated)

41745.7 Da

IEP (calculated)

8.917

GRAVY (calculated)

-0.079

Length

365 amino acids

Sequence
(BLAST)

001: MTQTTCIICY NKLNYITIRS DYAKDNYLII ALYCRFDRDL RWRTGVQLFP VVCESSNNFK VTKEALEEAY SKAQESNIKV KGLLINNPSN PLGTILDKET
101: LKDILRFIND KNIHLVCDEI YAATAFSQPS FISISEVKSE VVGCNDDLVH IVYSLSKDLG FPGFRVGIIY SYNDAVVNIA RKMSSFGLVS TQTQRLIASM
201: LLDTIFVEDF IAKSSMRLLQ RYGLFTKGLG QVGITTLKSN AGLFIWMDLR RFLENSTFDD ELKLWHIIID KVKLNVSPGC SFHCSEPGWF RVCFANMDDA
301: TMKIALRRIR HFVYLQPNKG VEVATKKQYC RTRSKLEISL SFRRLDDFMN SPHSPMSSPM VQARN

Best Arabidopsis Sequence Match ( AT1G01480.1 )
(BLAST)

001: MGLPGKNKGA VLSKIATNNQ HGENSEYFDG WKAYDKDPFH LSRNPHGIIQ MGLAENQLCL DLIKDWVKEN PEASICTLEG IHQFSDIANF QDYHGLKKFR
101: QAIAHFMGKA RGGRVTFDPE RVVMSGGATG ANETIMFCLA DPGDVFLIPS PYYAAFDRDL RWRTGVEIIP VPCSSSDNFK LTVDAAEWAY KKAQESNKKV
201: KGLILTNPSN PLGTMLDKDT LTNLVRFVTR KNIHLVVDEI YAATVFAGGD FVSVAEVVND VDISEVNVDL IHIVYSLSKD MGLPGFRVGI VYSFNDSVVS
301: CARKMSSFGL VSSQTQLMLA SMLSDDQFVD NFLMESSRRL GIRHKVFTTG IKKADIACLT SNAGLFAWMD LRHLLRDRNS FESEIELWHI IIDRVKLNVS
401: PGSSFRCTEP GWFRICFANM DDDTLHVALG RIQDFVSKNK NKIVEKASEN DQVIQNKSAK KLKWTQTNLR LSFRRLYEDG LSSPGIMSPH SPLLRA

Arabidopsis Description

ACS21-aminocyclopropane-1-carboxylate synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q06402]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.