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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g108280.2.1
Solyc02g011700.1.1
Solyc02g081170.2.1
Solyc02g083710.2.1
Solyc02g090390.2.1
Solyc03g007310.2.1
Solyc03g033430.1.1
Solyc03g095780.1.1
Solyc04g050340.1.1
Solyc04g050360.1.1
Solyc04g050370.1.1
Solyc04g050380.1.1
Solyc04g050390.1.1
Solyc04g050400.1.1
Solyc04g050410.1.1
Solyc04g050420.1.1
Solyc04g050430.1.1
Solyc04g082760.2.1
Solyc05g052420.1.1
Solyc06g050500.2.1
Solyc06g061180.1.1
Solyc06g075180.1.1
Solyc07g007790.2.1
Solyc07g053650.2.1
Solyc08g008100.2.1
Solyc08g081540.2.1
Solyc08g081550.2.1
Solyc08g082180.2.1
Solyc09g015380.1.1
Solyc10g008180.1.1
Solyc10g076410.1.1
Solyc10g085310.1.1
Solyc11g065670.1.1
Solyc11g069440.1.1
Solyc12g009570.1.1
Solyc12g055990.1.1
Solyc12g056180.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G26080.1 Solyc08g082180.2.1 AT1G01360.1 19407143
AT4G26080.1 Solyc12g055990.1.1 AT1G01360.1 19407143
AT4G26080.1 Solyc08g082180.2.1 AT1G01360.1 19874541
AT4G26080.1 Solyc12g055990.1.1 AT1G01360.1 19874541
AT4G26080.1 Solyc02g011700.1.1 AT2G18960.1 19874541
AT4G26080.1 Solyc07g053650.2.1 AT2G20580.1 19874541
AT4G26080.1 Solyc10g008180.1.1 AT2G20580.1 19874541
AT4G26080.1 Solyc04g082760.2.1 AT2G33610.1 19033529
AT4G26080.1 Solyc09g015380.1.1 AT2G38310.1 19407142
AT4G26080.1 Solyc10g076410.1.1 AT2G38310.1 19407142
AT4G26080.1 Solyc10g085310.1.1 AT2G38310.1 19407142
AT4G26080.1 Solyc09g015380.1.1 AT2G38310.1 19874541
AT4G26080.1 Solyc10g076410.1.1 AT2G38310.1 19874541
AT4G26080.1 Solyc10g085310.1.1 AT2G38310.1 19874541
AT4G26080.1 Solyc03g095780.1.1 AT2G40330.1 19874541
AT4G26080.1 Solyc05g052420.1.1 AT2G40330.1 19874541
AT4G26080.1 Solyc06g050500.2.1 AT2G40330.1 19874541
AT4G26080.1 Solyc04g050340.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050360.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050370.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050380.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050390.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050400.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050410.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050420.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc04g050430.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc06g075180.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc11g065670.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc11g069440.1.1 AT3G53430.1 19874541
AT4G26080.1 Solyc08g082180.2.1 AT4G01026.1 19874541
AT4G26080.1 Solyc12g055990.1.1 AT4G01026.1 19874541
AT4G26080.1 Solyc08g008100.2.1 AT4G11280.1 19705149
AT4G26080.1 Solyc08g081540.2.1 AT4G11280.1 19705149
AT4G26080.1 Solyc08g081550.2.1 AT4G11280.1 19705149
AT4G26080.1 Solyc12g056180.1.1 AT4G11280.1 19705149
AT4G26080.1 Solyc06g061180.1.1 AT4G17870.1 19407142
AT4G26080.1 Solyc06g061180.1.1 AT4G17870.1 19874541
AT4G26080.1 Solyc03g007310.2.1 AT4G27920.1 19874541
AT4G26080.1 Solyc01g108280.2.1 AT4G33950.1 16365038
AT4G26080.1 Solyc01g108280.2.1 AT4G33950.1 19874541
AT4G26080.1 Solyc02g083710.2.1 AT4G38630.1 19874541
AT4G26080.1 Solyc03g033430.1.1 AT4G38630.1 19874541
AT4G26080.1 Solyc07g007790.2.1 AT5G20280.1 19874541
AT4G26080.1 Solyc06g061180.1.1 AT5G46790.1 19874541
AT4G26080.1 Solyc03g007310.2.1 AT5G53160.2 19874541
AT4G26080.1 Solyc02g090390.2.1 AT5G66880.1 19874541
AT5G57050.1 Solyc08g082180.2.1 AT1G01360.1 19407143
AT5G57050.1 Solyc12g055990.1.1 AT1G01360.1 19407143
AT5G57050.1 Solyc04g082760.2.1 AT2G33610.1 19033529
AT5G57050.1 Solyc03g095780.1.1 AT2G40330.1 21798944
AT5G57050.1 Solyc05g052420.1.1 AT2G40330.1 21798944
AT5G57050.1 Solyc06g050500.2.1 AT2G40330.1 21798944
AT5G57050.1 Solyc02g081170.2.1 AT4G04020.1 16571665
AT5G57050.1 Solyc06g061180.1.1 AT4G17870.1 19407142
AT5G57050.1 Solyc12g009570.1.1 AT5G35410.1 14504388
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400046382 Potato cytosol 94.03 92.65
Solyc08g062640.2.1 Tomato cytosol 16.42 65.67
CDY50002 Canola cytosol 19.4 60.82
CDY42756 Canola cytosol 37.69 48.91
Bra019121.1-P Field mustard cytosol 37.5 48.67
CDX92752 Canola cytosol 36.94 48.29
CDX94382 Canola cytosol 37.69 48.1
CDY50003 Canola nucleus 36.75 48.05
AT5G57050.1 Thale cress cytosol 37.69 47.75
CDY38260 Canola cytosol 37.31 47.39
Bra010441.1-P Field mustard cytosol 37.31 47.39
Bra002766.1-P Field mustard cytosol 37.31 47.39
Bra013945.1-P Field mustard cytosol 37.5 47.29
CDX89368 Canola cytosol 37.5 47.18
CDY14318 Canola nucleus 37.13 47.16
CDY54381 Canola cytosol, mitochondrion, plastid 36.94 46.81
AT4G26080.1 Thale cress cytosol, nucleus, plastid 37.69 46.54
Solyc12g096020.1.1 Tomato cytosol, nucleus, plastid 41.98 44.29
KRH12454 Soybean cytosol 40.3 40.99
KRH19237 Soybean cytosol, nucleus, peroxisome 40.67 40.67
KRH37441 Soybean cytosol 39.18 40.23
KRH02667 Soybean cytosol, nucleus, peroxisome 40.3 40.15
Solyc03g006940.1.1 Tomato nucleus 23.69 36.81
Solyc03g007230.2.1 Tomato cytosol 26.68 36.02
Solyc06g076400.2.1 Tomato nucleus 27.43 35.85
Solyc05g052980.2.1 Tomato nucleus 27.24 35.7
Solyc03g006930.1.1 Tomato cytosol 21.83 35.35
Solyc03g096670.2.1 Tomato nucleus 26.68 35.22
Solyc03g006950.1.1 Tomato cytosol, nucleus, peroxisome 22.76 35.16
Solyc03g006960.2.1 Tomato nucleus 24.07 34.31
Solyc08g062650.2.1 Tomato extracellular 29.1 33.26
Solyc08g082260.1.1 Tomato nucleus 23.13 31.55
Solyc06g051940.2.1 Tomato cytosol 25.0 30.32
Solyc06g082700.1.1 Tomato cytosol, peroxisome, plastid 7.09 26.76
Solyc06g084100.2.1 Tomato endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole 13.25 26.69
Solyc09g065650.2.1 Tomato mitochondrion 13.62 7.82
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10GO:GO:0003674
GO:GO:0003824GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169
GO:GO:0046872InterPro:IPR001932InterPro:IPR036457UniProt:K4CDX6PFAM:PF00481InterPro:PP2C
InterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832
PANTHER:PTHR13832:SF516SMART:SM00332SUPFAM:SSF81606EnsemblPlantsGene:Solyc07g040990.2EnsemblPlants:Solyc07g040990.2.1UniParc:UPI000276B801
Description
No Description!
Coordinates
chr7:+:51485207..51488433
Molecular Weight (calculated)
59199.7 Da
IEP (calculated)
5.295
GRAVY (calculated)
-0.267
Length
536 amino acids
Sequence
(BLAST)
001: MQDCFETGKL IYDESVLPTC IDFAGYELIP NTTSLLSEPN KCKLPCSVSN HRVSRDKANL FMTVADCHEI RIGKSFSSTV VGNGNCLIAS EVEDGRSMDN
101: NLISPTDELL GNMTCSDSLV DERVSMPNQE CTGLEVKVGK MPPRDEEKKV GVSQILRKSF SCSLANELVN ESQLVSDIVS TMVVGAEDYK RKLSPSHLET
201: SQEIKISRPN TLCFDSVPLW GLITIQGKRP EMEDTAIALP KFLKIPSHIL TDAPVSHALS QTLTAHLYGV YDGHGGSQVA NYCHERLHMV LAQEIDIMKE
301: DPHNGSVNWK EQWSKAFLNC FCRVDDEVGG FCSETDGIEP DLSVIAPEAV GSTAIVAVVS PSHIIVANCG DSRAVLCRGK LPMPLTIDHK PNREDECSRI
401: EELGGKVINW DGHRVSGVLA VSRSIGDRYL RPYVIPDPEM MFVPRAKEDD CLILASDGLW DVLTNEEACD VARRRILLWH KKNGGTLSRE RGENVDPAAQ
501: DAAEYLTRVA LQRGSRDNIS VIVVDLKAQR KFKKKT
Best Arabidopsis Sequence Match ( AT5G57050.1 )
(BLAST)
001: MDEVSPAVAV PFRPFTDPHA GLRGYCNGES RVTLPESSCS GDGAMKDSSF EINTRQDSLT SSSSAMAGVD ISAGDEINGS DEFDPRSMNQ SEKKVLSRTE
101: SRSLFEFKCV PLYGVTSICG RRPEMEDSVS TIPRFLQVSS SSLLDGRVTN GFNPHLSAHF FGVYDGHGGS QVANYCRERM HLALTEEIVK EKPEFCDGDT
201: WQEKWKKALF NSFMRVDSEI ETVAHAPETV GSTSVVAVVF PTHIFVANCG DSRAVLCRGK TPLALSVDHK PDRDDEAARI EAAGGKVIRW NGARVFGVLA
301: MSRSIGDRYL KPSVIPDPEV TSVRRVKEDD CLILASDGLW DVMTNEEVCD LARKRILLWH KKNAMAGEAL LPAEKRGEGK DPAAMSAAEY LSKMALQKGS
401: KDNISVVVVD LKGIRKFKSK SLN
Arabidopsis Description
ABI2AtABI2 [Source:UniProtKB/TrEMBL;Acc:A0A178UGB7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.