Factsheet for Solyc03g006940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090149	Potato	cytosol	82.03	85.24
Solyc03g006950.1.1	Tomato	cytosol, nucleus, peroxisome	82.61	82.13
Solyc03g006960.2.1	Tomato	nucleus	52.75	48.4
GSMUA_Achr11P...	Banana	cytosol	35.07	47.83
GSMUA_Achr8P14370_001	Banana	cytosol	40.0	46.94
Solyc03g006930.1.1	Tomato	cytosol	44.64	46.53
HORVU7Hr1G008370.1	Barley	cytosol, peroxisome	13.04	42.86
AT5G51760.1	Thale cress	cytosol	49.86	41.35
CDY38877	Canola	cytosol	48.12	40.89
Bra029160.1-P	Field mustard	cytosol	48.7	40.19
CDY32620	Canola	cytosol	44.06	38.87
Solyc08g062640.2.1	Tomato	cytosol	15.07	38.81
TraesCS7D01G042600.1	Wheat	cytosol	37.39	37.61
HORVU7Hr1G008520.2	Barley	cytosol	17.97	37.35
Os04t0167875-00	Rice	nucleus, peroxisome, plastid	9.28	37.21
TraesCS4A01G443500.1	Wheat	mitochondrion	37.97	35.69
TraesCS4A01G443400.1	Wheat	mitochondrion	37.97	35.69
HORVU7Hr1G008470.2	Barley	cytosol	38.26	35.48
GSMUA_Achr11P...	Banana	cytosol	41.16	35.06
TraesCS7D01G042300.1	Wheat	cytosol	37.39	34.86
Solyc05g052980.2.1	Tomato	nucleus	40.58	34.23
TraesCS7A01G048200.1	Wheat	plastid	36.23	34.15
Solyc03g096670.2.1	Tomato	nucleus	40.0	33.99
Solyc03g007230.2.1	Tomato	cytosol	37.68	32.75
Solyc06g076400.2.1	Tomato	nucleus	38.84	32.68
TraesCS2A01G000400.1	Wheat	cytosol, nucleus, peroxisome, plastid	40.58	32.18
Zm00001d025055_P001	Maize	cytosol	42.9	31.9
Solyc08g082260.1.1	Tomato	nucleus	35.94	31.55
TraesCS2B01G023600.1	Wheat	cytosol	42.03	31.52
TraesCS2D01G000300.1	Wheat	cytosol	41.45	31.5
EES11811	Sorghum	plastid	44.06	31.08
HORVU2Hr1G000090.2	Barley	cytosol	40.87	31.06
Solyc06g082700.1.1	Tomato	cytosol, peroxisome, plastid	12.75	30.99
HORVU7Hr1G008560.2	Barley	mitochondrion	21.16	30.04
Solyc06g051940.2.1	Tomato	cytosol	38.26	29.86
HORVU7Hr1G008550.1	Barley	cytosol	19.13	29.2
Zm00001d004357_P001	Maize	nucleus	42.61	27.02
Solyc12g096020.1.1	Tomato	cytosol, nucleus, plastid	38.84	26.38
Solyc06g084100.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	20.0	25.94
Solyc07g040990.2.1	Tomato	cytosol	36.81	23.69
Solyc08g062650.2.1	Tomato	extracellular	29.28	21.54
Solyc09g065650.2.1	Tomato	mitochondrion	21.45	7.92

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	GO:GO:0046872
InterPro:IPR001932	InterPro:IPR036457	UniProt:K4BEB7	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS
InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF537
SMART:SM00332	SUPFAM:SSF81606	EnsemblPlantsGene:Solyc03g006940.1	EnsemblPlants:Solyc03g006940.1.1	UniParc:UPI0002767D70	SEG:seg

Description

No Description!

Coordinates

chr3:+:1510035..1512123

Molecular Weight (calculated)

37875.0 Da

IEP (calculated)

4.711

GRAVY (calculated)

-0.185

Length

345 amino acids

Sequence
(BLAST)

001: MTSPRRMSDS DYDSDSDSDS DSATSGTGAP EEAVPLFGAI SLIGRRSSME DAISVWPNLC SPYINQHRPI DFFAVYDGHG GPQVAGLCRD RMYLMLLEEL
101: LMTNTIITGS SNNNNNIFAR LFQRQLERES IKETWKRVLK SCFERIDEMA FDTCYECGIG VPCGCPPQHY GLGGSTALLT ILTEKTIIVA NCGDSRAVLC
201: RGGRSIPLSI DHTPDRAEER ARIEACGGHV VYDDCARVLG ILAISRAIGD KYLKKYIISE PEFTFTKREA EDECLILASD GLWNVVSNDD ACMVARECLQ
301: KEKPFGRGEV FSSPSNAAAA LLTRLAMGRG SQDNISVIVV DLKID

Best Arabidopsis Sequence Match ( AT5G51760.2 )
(BLAST)

001: MRRQAAVFGE PSSSRNRDRT DMEVYSSFDV PLRKQARRSE IGGLPADIGG FLAPPAASSC QKSEAPVWKG EETEDEPLYG IVSVMGRSRK MEDSVTVKPN
101: LCKPEVNRQR PVHFFAVYDG HGGSQVSTLC STTMHTFVKE ELEQNLEEEE EGSENDVVER KWRGVMKRSF KRMDEMATST CVCGTSVPLC NCDPREAAIS
201: GSTAVTAVLT HDHIIVANTG DSRAVLCRNG MAIPLSNDHK PDRPDERARI EAAGGRVLVV DGARVEGILA TSRAIGDRYL KPMVAWEPEV TFMRRESGDE
301: CLVLASDGLW DVLSSQLACD IARFCLREET PSSLDLNRMA QEDDNDGEQN PSRSVLAATL LTRLALGRQS SDNISVVVID LKNSSQ

Arabidopsis Description

AHG1Probable protein phosphatase 2C 75 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.