Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400075333 Potato cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 94.09 89.18
Solyc08g062640.2.1 Tomato cytosol 21.06 79.85
Os01t0583100-01 Rice cytosol 47.83 61.36
VIT_04s0008g01420.t01 Wine grape cytosol 65.55 60.44
HORVU7Hr1G029040.1 Barley cytosol, peroxisome 33.86 58.7
GSMUA_Achr7P24000_001 Banana cytosol 45.08 58.42
Zm00001d011202_P002 Maize cytosol, peroxisome, plastid 48.82 56.62
Zm00001d009747_P001 Maize cytosol 46.26 55.56
HORVU3Hr1G067380.4 Barley cytosol 36.81 55.49
KXG22681 Sorghum cytosol 46.26 54.91
HORVU3Hr1G067360.1 Barley cytosol, peroxisome 5.51 54.9
Zm00001d039163_P002 Maize cytosol 46.26 54.78
Os05t0592800-02 Rice endoplasmic reticulum, vacuole 47.24 53.93
TraesCS1D01G449700.1 Wheat cytosol 43.5 53.9
OQU87413 Sorghum cytosol 40.55 53.79
TraesCS1A01G441200.1 Wheat cytosol 43.5 53.64
Zm00001d038846_P001 Maize cytosol, nucleus 38.78 53.24
HORVU3Hr1G050340.1 Barley plasma membrane, vacuole 49.41 52.62
TraesCS3B01G240000.1 Wheat peroxisome, plasma membrane, vacuole 49.61 52.61
TraesCS3A01G209200.1 Wheat peroxisome, plasma membrane, vacuole 49.41 52.4
HORVU1Hr1G094840.9 Barley extracellular, mitochondrion 42.91 52.15
TraesCS3D01G212100.1 Wheat peroxisome, plasma membrane, vacuole 48.82 52.1
GSMUA_Achr8P05700_001 Banana cytosol, peroxisome, plasma membrane 44.49 51.83
EES00964 Sorghum peroxisome, plasma membrane, vacuole 49.02 51.66
KXG22422 Sorghum cytosol, nucleus, plastid 38.58 51.58
TraesCS1A01G358600.1 Wheat cytosol 38.39 51.32
TraesCS1B01G375100.1 Wheat cytosol 38.19 50.92
Zm00001d044301_P001 Maize cytosol, nucleus 48.43 50.83
TraesCS1D01G363500.1 Wheat cytosol 38.19 50.79
TraesCS3D01G249000.1 Wheat cytosol 37.8 50.66
HORVU1Hr1G080290.6 Barley cytosol 38.19 50.52
Zm00001d011132_P001 Maize cytosol, nucleus 14.76 50.34
TraesCS3A01G249000.1 Wheat cytosol 37.99 50.0
Solyc08g062650.2.1 Tomato extracellular 46.06 49.89
TraesCS1B01G475700.1 Wheat cytosol 43.11 49.21
GSMUA_Achr3P26270_001 Banana cytosol, peroxisome, plastid 46.06 47.18
TraesCS3B01G277900.1 Wheat cytosol 38.19 46.52
Zm00001d011131_P001 Maize cytosol 25.2 45.39
Os05t0537400-00 Rice cytosol 26.38 45.27
Solyc07g040990.2.1 Tomato cytosol 44.29 41.98
Solyc03g006940.1.1 Tomato nucleus 26.38 38.84
TraesCS7A01G047900.1 Wheat cytosol, mitochondrion, peroxisome 8.07 36.94
Solyc03g006930.1.1 Tomato cytosol 24.02 36.86
Solyc05g052980.2.1 Tomato nucleus 29.53 36.67
Solyc03g006950.1.1 Tomato cytosol, nucleus, peroxisome 24.61 36.02
Solyc03g096670.2.1 Tomato nucleus 28.74 35.96
Solyc06g076400.2.1 Tomato nucleus 28.35 35.12
Solyc03g006960.2.1 Tomato nucleus 25.79 34.84
Solyc03g007230.2.1 Tomato cytosol 26.57 34.01
Solyc08g082260.1.1 Tomato nucleus 25.98 33.59
Solyc06g051940.2.1 Tomato cytosol 27.56 31.67
Solyc06g082700.1.1 Tomato cytosol, peroxisome, plastid 8.46 30.28
Solyc06g084100.2.1 Tomato endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole 13.58 25.94
Solyc09g065650.2.1 Tomato mitochondrion 14.57 7.92
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10GO:GO:0003674
GO:GO:0003824GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169
GO:GO:0046872InterPro:IPR001932InterPro:IPR036457UniProt:K4DH75PFAM:PF00481InterPro:PP2C
InterPro:PP2C_BSInterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832
PANTHER:PTHR13832:SF374SMART:SM00332SUPFAM:SSF81606EnsemblPlantsGene:Solyc12g096020.1EnsemblPlants:Solyc12g096020.1.1UniParc:UPI0002769A18
SEG:seg:::::
Description
No Description!
Coordinates
chr12:-:65098802..65101311
Molecular Weight (calculated)
55684.5 Da
IEP (calculated)
4.372
GRAVY (calculated)
-0.235
Length
508 amino acids
Sequence
(BLAST)
001: MFFYQLILLG NGKWSVEAHD TVSGGNDDCS SADSESDLSI TASSVPEESR SEGTMSLDVI SENESNWIAG DAVVRESEDD DSLSLEGDQI LDNSCSLSVV
101: SDCSSLCADD FIGFEIASDI EGQDFVDSQK SISHDELIGK TGVLVESDVE DTLIRPAAVP ERLEEQITDK DLNATVSRSV FEVDYIPLWG YTSICGRRPE
201: MEDAFATVPR FMKIPLPMLI GDRVLDGLSR RLSHLTTHFF GVYDGHGGSQ VANYCRDRIH AVLAEELETF MMNLSDESIR QSCQELWNRA FTNCFLKVDA
301: EIGGGAGDEP VAPETVGSTA VVAVVCSSHI IVANCGDSRA VLCRGKEPMA LSVDHKPNRE DEYKRIEAAG GKVIQWNGHR VFGVLAMSRS IGDKYLKPWI
401: IPDPEVTFIP RTKDDKCLIL ASDGLWDVMT NEEACDMARK RILMWHKKYG ATLPVERGEG IDPASQAAAE CLSNRALQKG SKDNITVIVV DLKAQKKFKT
501: NTSTQLAS
Best Arabidopsis Sequence Match ( AT1G72770.3 )
(BLAST)
001: MEEMTPAVAM TLSLAANTMC ESSPVEITQL KNVTDAADLL SDSENQSFCN GGTECTMEDV SELEEVGEQD LLKTLSDTRS GSSNVFDEDD VLSVVEDNSA
101: VISEGLLVVD AGSELSLSNT AMEIDNGRVL ATAIIVGESS IEQVPTAEVL IAGVNQDTNT SEVVIRLPDE NSNHLVKGRS VYELDCIPLW GTVSIQGNRS
201: EMEDAFAVSP HFLKLPIKML MGDHEGMSPS LTHLTGHFFG VYDGHGGHKV ADYCRDRLHF ALAEEIERIK DELCKRNTGE GRQVQWDKVF TSCFLTVDGE
301: IEGKIGRAVV GSSDKVLEAV ASETVGSTAV VALVCSSHIV VSNCGDSRAV LFRGKEAMPL SVDHKPDRED EYARIENAGG KVIQWQGARV FGVLAMSRSI
401: GDRYLKPYVI PEPEVTFMPR SREDECLILA SDGLWDVMNN QEVCEIARRR ILMWHKKNGA PPLAERGKGI DPACQAAADY LSMLALQKGS KDNISIIVID
501: LKAQRKFKTR T
Arabidopsis Description
HAB1Protein phosphatase 2C 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAJ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.