Factsheet for Solyc06g076400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021440.2.1
Solyc05g017930.1.1
Solyc06g061180.1.1
Solyc09g015380.1.1
Solyc10g076410.1.1
Solyc10g085310.1.1
Solyc12g006850.1.1
Solyc12g099240.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	Solyc02g021440.2.1	AT1G30270.1	17898163
AT1G07430.1	Solyc05g017930.1.1	AT2G26650.1	17898163
AT1G07430.1	Solyc12g006850.1.1	AT2G26650.1	17898163
AT1G07430.1	Solyc12g099240.1.1	AT3G06610.1	21798944
AT5G59220.1	Solyc09g015380.1.1	AT2G38310.1	19407142
AT5G59220.1	Solyc10g076410.1.1	AT2G38310.1	19407142
AT5G59220.1	Solyc10g085310.1.1	AT2G38310.1	19407142
AT5G59220.1	Solyc06g061180.1.1	AT4G17870.1	19407142

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077989	Potato	cytosol	95.12	95.12
CDY18067	Canola	cytosol	9.51	66.1
VIT_06s0004g05460.t01	Wine grape	nucleus	60.73	63.36
AT2G29380.1	Thale cress	nucleus	53.17	60.22
CDY45436	Canola	cytosol	53.41	59.84
GSMUA_AchrUn_...	Banana	cytosol	41.22	59.72
Bra018398.1-P	Field mustard	cytosol	53.17	59.56
CDY40181	Canola	cytosol	53.17	59.56
Solyc05g052980.2.1	Tomato	nucleus	58.05	58.19
KXG35986	Sorghum	cytosol, peroxisome, plastid	27.8	56.16
Solyc03g096670.2.1	Tomato	nucleus	55.37	55.91
AT5G59220.1	Thale cress	nucleus	55.61	55.21
Bra002594.1-P	Field mustard	plastid	55.37	55.1
CDY33008	Canola	nucleus, plastid	52.68	54.68
CDY06705	Canola	nucleus	51.95	54.62
CDX80307	Canola	nucleus, plastid	52.68	54.55
GSMUA_Achr6P15180_001	Banana	cytosol	46.59	51.62
Bra031574.1-P	Field mustard	nucleus	54.88	51.61
TraesCS5A01G183600.1	Wheat	peroxisome	43.9	51.58
GSMUA_Achr5P29000_001	Banana	cytosol	48.05	51.57
GSMUA_Achr11P...	Banana	cytosol	49.51	51.39
CDY06259	Canola	nucleus	54.63	51.38
TraesCS5B01G182000.1	Wheat	peroxisome	43.66	51.29
Bra015579.1-P	Field mustard	nucleus	53.17	51.17
CDY10275	Canola	nucleus	53.66	51.16
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	43.66	51.14
TraesCS5D01G188600.1	Wheat	peroxisome	43.41	51.0
AT1G07430.1	Thale cress	nucleus	54.39	50.45
EER96576	Sorghum	cytosol	43.41	49.86
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	43.41	49.72
HORVU3Hr1G085930.3	Barley	nucleus, plastid	47.32	49.36
TraesCS3A01G362200.1	Wheat	nucleus, plastid	46.1	48.34
TraesCS3D01G355900.1	Wheat	plastid	46.34	47.86
Os09t0325700-01	Rice	cytosol	41.71	47.77
HORVU4Hr1G060370.1	Barley	nucleus	46.59	47.75
TraesCS4B01G210100.1	Wheat	nucleus	46.59	47.04
TraesCS4D01G210900.1	Wheat	nucleus	46.59	46.59
Os03t0268600-01	Rice	nucleus	45.85	46.53
Zm00001d028574_P001	Maize	nucleus	44.88	46.46
TraesCS4A01G094300.1	Wheat	nucleus	46.34	46.45
EER92493	Sorghum	nucleus	44.88	45.89
EES01744	Sorghum	plastid	45.61	45.39
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	45.61	45.28
Zm00001d042886_P001	Maize	nucleus	44.88	45.1
TraesCS3B01G394600.3	Wheat	plastid	46.83	44.86
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	44.88	44.44
Bra030455.1-P	Field mustard	cytosol	16.1	41.51
Solyc03g006960.2.1	Tomato	nucleus	37.8	41.22
Solyc03g006930.1.1	Tomato	cytosol	32.44	40.18
CDY36606	Canola	nucleus	24.15	39.6
KXG22152	Sorghum	nucleus	44.63	39.44
Solyc03g006940.1.1	Tomato	nucleus	32.68	38.84
Solyc03g007230.2.1	Tomato	cytosol	37.56	38.79
Solyc03g006950.1.1	Tomato	cytosol, nucleus, peroxisome	31.71	37.46
Solyc08g062640.2.1	Tomato	cytosol	12.2	37.31
Solyc08g082260.1.1	Tomato	nucleus	31.95	33.33
Solyc06g051940.2.1	Tomato	cytosol	33.17	30.77
Solyc06g082700.1.1	Tomato	cytosol, peroxisome, plastid	10.49	30.28
Solyc12g096020.1.1	Tomato	cytosol, nucleus, plastid	35.12	28.35
Solyc07g040990.2.1	Tomato	cytosol	35.85	27.43
Solyc08g062650.2.1	Tomato	extracellular	30.49	26.65
Solyc06g084100.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	16.34	25.19
Solyc09g065650.2.1	Tomato	mitochondrion	16.83	7.39

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.24.2.1	Gene3D:3.60.40.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:K4CA00	PFAM:PF00481	InterPro:PP2C
InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832
PANTHER:PTHR13832:SF518	SMART:SM00332	SUPFAM:SSF81606	EnsemblPlantsGene:Solyc06g076400.2	EnsemblPlants:Solyc06g076400.2.1	UniParc:UPI0002767117
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:47472269..47474212

Molecular Weight (calculated)

44862.1 Da

IEP (calculated)

4.894

GRAVY (calculated)

-0.346

Length

410 amino acids

Sequence
(BLAST)

001: MAEVCFGVVT ETDSSSPCES SSRAVRRRRM ELRKIKVIAG VTQPETENGI KRPKMKLISG SVSRICDNAV ESSSTDDDEE QLRLVETKGS PPTIILTPYL
101: GPLNSTLLVQ SVAYPKFGFA SVCGRRRDME DAVAIHPSFC QMEQGNSGEL HYFAVYDGHG CSHVATKCKE RLHELVKEEL ENTEGDHEEW EHLMNRSFNR
201: MEKEVIEWNK SVTGATCRCE LHTPECDAVG STAVVAVVTP DKIIVANCGD SRAILCRNGK AIPLSNDQKP DRPDELNRIQ EAGGRVIYWD GPRVSGVLAM
301: SRAIGDNYLK PYVICEPEVT ITDRTSEDDC LILASDGLWD VVSNDTACGV AGMCLKGNAS PASMPGNGTD GEVNSDQCCS DASMLLTKLA LARRSYDNVS
401: VVVVDLKNYK

Best Arabidopsis Sequence Match ( AT2G29380.1 )
(BLAST)

001: MAEICYEVVT DACPSSVYES TPAHSRRRPR FQTVMHEDWE KNCKRSKQEA LATRYSSIPR SSREDFSDQN VDVSSPRYGV SSVCGRRREM EDAVAIHPSF
101: SSPKNSEFPQ HYFGVYDGHG CSHVAARCRE RLHKLVQEEL SSDMEDEEEW KTTMERSFTR MDKEVVSWGD SVVTANCKCD LQTPACDSVG STAVVSVITP
201: DKIVVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELDRIE GAGGRVIYWD CPRVLGVLAM SRAIGDNYLK PYVSCEPEVT ITDRRDDDCL ILASDGLWDV
301: VSNETACSVA RMCLRGGGRR QDNEDPAISD KACTEASVLL TKLALARNSS DNVSVVVIDL RR

Arabidopsis Description

HAI3HAI3 [Source:UniProtKB/TrEMBL;Acc:A0A178VWK9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.