CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90240
CDY05281
CDY24678
CDY26276
CDY34938
CDY34941
CDY35373
CDY49976
CDY55714
CDY63182

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07430.1	CDX90240	AT1G30270.1	17898163
AT1G07430.1	CDY26276	AT1G30270.1	17898163
AT1G07430.1	CDY49976	AT1G30270.1	17898163
AT1G07430.1	CDY63182	AT1G30270.1	17898163
AT1G07430.1	CDY35373	AT2G26650.1	17898163
AT1G07430.1	CDY55714	AT2G26650.1	17898163
AT1G07430.1	CDY05281	AT3G06610.1	21798944
AT1G07430.1	CDY24678	AT3G06610.1	21798944
AT1G07430.1	CDY34938	AT3G06610.1	21798944
AT1G07430.1	CDY34941	AT3G06610.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06259	Canola	nucleus	80.0	45.87
CDY06705	Canola	nucleus	66.8	42.82
CDY10275	Canola	nucleus	66.8	38.84
AT1G07430.1	Thale cress	nucleus	68.0	38.46
CDY40181	Canola	cytosol	42.0	28.69
CDY45436	Canola	cytosol	41.6	28.42
GSMUA_AchrUn_...	Banana	cytosol	29.2	25.8
CDY67257	Canola	nucleus	36.8	24.8
CDY67227	Canola	cytosol	36.4	24.53
VIT_06s0004g05460.t01	Wine grape	nucleus	38.4	24.43
Solyc06g076400.2.1	Tomato	nucleus	39.6	24.15
GSMUA_Achr11P...	Banana	cytosol	37.6	23.8
GSMUA_Achr5P29000_001	Banana	cytosol	36.0	23.56
GSMUA_Achr6P15180_001	Banana	cytosol	34.8	23.51
TraesCS5A01G183600.1	Wheat	peroxisome	32.8	23.5
TraesCS5B01G182000.1	Wheat	peroxisome	32.8	23.5
Zm00001d020100_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	33.2	23.18
TraesCS5D01G188600.1	Wheat	peroxisome	32.0	22.92
Os09t0325700-01	Rice	cytosol	32.8	22.91
CDX80307	Canola	nucleus, plastid	36.0	22.73
EER96576	Sorghum	cytosol	32.0	22.41
CDY08530	Canola	nucleus	35.2	22.39
CDY33008	Canola	nucleus, plastid	35.2	22.28
CDY01017	Canola	nucleus	34.8	22.14
Os03t0268600-01	Rice	nucleus	35.6	22.03
Zm00001d005609_P001	Maize	cytosol, mitochondrion, nucleus, plastid	30.8	22.0
Zm00001d028574_P001	Maize	nucleus	34.8	21.97
HORVU3Hr1G085930.3	Barley	nucleus, plastid	34.0	21.63
TraesCS3A01G362200.1	Wheat	nucleus, plastid	33.6	21.48
TraesCS3D01G355900.1	Wheat	plastid	34.0	21.41
TraesCS4A01G094300.1	Wheat	nucleus	34.8	21.27
TraesCS4D01G210900.1	Wheat	nucleus	34.8	21.22
KXG35986	Sorghum	cytosol, peroxisome, plastid	17.2	21.18
TraesCS4B01G210100.1	Wheat	nucleus	34.4	21.18
Zm00001d042886_P001	Maize	nucleus	34.4	21.08
Zm00001d012401_P001	Maize	cytosol, mitochondrion, nucleus, plastid	34.8	21.07
HORVU4Hr1G060370.1	Barley	nucleus	33.6	21.0
Os01t0846300-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.4	20.77
EER92493	Sorghum	nucleus	33.2	20.7
EES01744	Sorghum	plastid	34.0	20.63
TraesCS3B01G394600.3	Wheat	plastid	34.0	19.86
CDY50002	Canola	cytosol	12.4	18.13
KXG22152	Sorghum	nucleus	33.2	17.89
CDX94382	Canola	cytosol	29.2	17.38
CDY38877	Canola	cytosol	28.0	17.24
CDX89368	Canola	cytosol	29.2	17.14
CDX92752	Canola	cytosol	28.0	17.07
CDY14318	Canola	nucleus	28.4	16.82
CDY42756	Canola	cytosol	27.6	16.71
CDY38260	Canola	cytosol	28.0	16.59
CDY50003	Canola	nucleus	27.2	16.59
CDX96761	Canola	cytosol	23.2	16.57
CDY54381	Canola	cytosol, mitochondrion, plastid	27.6	16.31
CDX83901	Canola	cytosol	22.4	16.0
CDY32620	Canola	cytosol	24.4	15.6
CDX72943	Canola	cytosol, peroxisome, plastid	26.8	14.11
CDY48313	Canola	cytosol	28.0	13.97
CDX96432	Canola	cytosol, peroxisome, plastid	26.8	13.84
CDY26234	Canola	cytosol	27.2	13.71
PGSC0003DMT400049695	Potato	extracellular	3.6	8.18
CDY18067	Canola	cytosol	1.2	5.08
CDY53715	Canola	plasma membrane, vacuole	13.6	3.29
CDX93912	Canola	plasma membrane, vacuole	13.6	3.28

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	GO:A0A078HFT1	UniProt:A0A078HFT1
EnsemblPlants:CDY36606	ProteinID:CDY36606	ProteinID:CDY36606.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004721
GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169	EnsemblPlantsGene:GSBRNA2T00062312001	InterPro:IPR001932
InterPro:IPR036457	PFAM:PF00481	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF518	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI0004EE9E70	:	:	:	:	:

Description

BnaC06g06590DBnaC06g06590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFT1]

Coordinates

chrLK032379:+:110441..112097

Molecular Weight (calculated)

28080.9 Da

IEP (calculated)

8.132

GRAVY (calculated)

-0.618

Length

250 amino acids

Sequence
(BLAST)

001: MSPAKMNKTV AAAEDTEGIY KRNKQDEYDF MNSTSPPRSS PEGCSEADEN VNDISGENSS VIGGVPSKLT VRETDARPRY GVASVCGRRR DMEDTVSIHP
101: SFVRKQTEFS RTRWHYFGVY DGHGCSHVAS RCKERLHELV QEEASPTRTK RQFFVGIENQ FLYLQITSRI VRTSWIGFKK QEGDDGLWDV VTNDAACATV
201: QIYLNKKEIT DKACAEASVL LTNLALGKHS SDNVSVVVID LSRRRKRHVA

Best Arabidopsis Sequence Match ( AT1G07430.1 )
(BLAST)

001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA

Arabidopsis Description

AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.