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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX74796
CDX76554
CDX90028
CDX90440
CDX90850
CDX93191
CDX94540
CDY01498
CDY04688
CDY07608
CDY08877
CDY15183
CDY16684
CDY18867
CDY21291
CDY23721
CDY24911
CDY36813
CDY37705
CDY44603
CDY52923
CDY69797
CDY70860
CDY71809

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G57050.1 CDX90028 AT1G01360.1 19407143
AT5G57050.1 CDY04688 AT1G01360.1 19407143
AT5G57050.1 CDY15183 AT1G01360.1 19407143
AT5G57050.1 CDY23721 AT2G33610.1 19033529
AT5G57050.1 CDY37705 AT2G33610.1 19033529
AT5G57050.1 CDX74796 AT2G40330.1 21798944
AT5G57050.1 CDX93191 AT2G40330.1 21798944
AT5G57050.1 CDY07608 AT2G40330.1 21798944
AT5G57050.1 CDY18867 AT2G40330.1 21798944
AT5G57050.1 CDY24911 AT2G40330.1 21798944
AT5G57050.1 CDY52923 AT2G40330.1 21798944
AT5G57050.1 CDX90850 AT4G04020.1 16571665
AT5G57050.1 CDX94540 AT4G04020.1 16571665
AT5G57050.1 CDY16684 AT4G04020.1 16571665
AT5G57050.1 CDY21291 AT4G04020.1 16571665
AT5G57050.1 CDY71809 AT4G04020.1 16571665
AT5G57050.1 CDX76554 AT4G17870.1 19407142
AT5G57050.1 CDX90440 AT4G17870.1 19407142
AT5G57050.1 CDY01498 AT4G17870.1 19407142
AT5G57050.1 CDY08877 AT4G17870.1 19407142
AT5G57050.1 CDY69797 AT4G17870.1 19407142
AT5G57050.1 CDY70860 AT4G17870.1 19407142
AT5G57050.1 CDY36813 AT5G35410.1 14504388
AT5G57050.1 CDY44603 AT5G35410.1 14504388
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38260 Canola cytosol 97.64 97.87
Bra002766.1-P Field mustard cytosol 97.4 97.63
AT5G57050.1 Thale cress cytosol 85.82 85.82
CDY42756 Canola cytosol 74.23 76.03
CDX92752 Canola cytosol 73.05 75.37
CDY50002 Canola cytosol 30.26 74.85
CDY50003 Canola nucleus 72.1 74.39
CDX94382 Canola cytosol 73.05 73.57
CDX89368 Canola cytosol 73.05 72.54
CDY14318 Canola nucleus 71.87 72.04
CDX96761 Canola cytosol 42.55 51.43
CDX83901 Canola cytosol 42.08 50.86
CDY18067 Canola cytosol 6.62 47.46
CDX72943 Canola cytosol, peroxisome, plastid 50.12 44.63
CDX96432 Canola cytosol, peroxisome, plastid 49.88 43.59
CDY26234 Canola cytosol 49.88 42.54
CDY48313 Canola cytosol 49.17 41.52
CDY67227 Canola cytosol 36.41 41.51
CDY67257 Canola nucleus 36.17 41.24
CDY40181 Canola cytosol 33.33 38.52
CDY45436 Canola cytosol 33.33 38.52
KRH19237 Soybean cytosol, nucleus, peroxisome 48.7 38.43
KRH37441 Soybean cytosol 47.04 38.12
KRH02667 Soybean cytosol, nucleus, peroxisome 48.46 38.1
KRH12454 Soybean cytosol 47.28 37.95
PGSC0003DMT400046382 Potato cytosol 48.46 37.68
CDY01017 Canola nucleus 34.52 37.15
Solyc07g040990.2.1 Tomato cytosol 46.81 36.94
CDY08530 Canola nucleus 34.28 36.9
CDY06705 Canola nucleus 33.81 36.67
CDX80307 Canola nucleus, plastid 32.62 34.85
CDY33008 Canola nucleus, plastid 32.39 34.68
CDY38877 Canola cytosol 33.1 34.48
CDY32620 Canola cytosol 31.68 34.27
CDY10275 Canola nucleus 34.28 33.72
CDY06259 Canola nucleus 34.04 33.03
CDY36606 Canola nucleus 16.31 27.6
CDY53715 Canola plasma membrane, vacuole 22.7 9.28
CDX93912 Canola plasma membrane, vacuole 22.7 9.27
Protein Annotations
KEGG:04658+3.1.3.16KEGG:04660+3.1.3.16MapMan:11.1.2.1.1.2MapMan:18.4.24.2.1Gene3D:3.60.40.10GO:A0A078IWL4
UniProt:A0A078IWL4EnsemblPlants:CDY54381ProteinID:CDY54381ProteinID:CDY54381.1GO:GO:0003674GO:GO:0003824
GO:GO:0004721GO:GO:0004722GO:GO:0005488GO:GO:0006464GO:GO:0006470GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016787GO:GO:0019538GO:GO:0043169GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00013976001InterPro:IPR001932InterPro:IPR036457PFAM:PF00481InterPro:PP2CInterPro:PP2C_BS
InterPro:PPM-type_dom_sfInterPro:PPM-type_phosphatase_domScanProsite:PS01032PFscan:PS51746PANTHER:PTHR13832PANTHER:PTHR13832:SF373
SMART:SM00332SUPFAM:SSF81606UniParc:UPI0004EDC35DSEG:seg::
Description
BnaC09g53650DBnaC09g53650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWL4]
Coordinates
chrLK033312:-:1092..2979
Molecular Weight (calculated)
46479.3 Da
IEP (calculated)
6.412
GRAVY (calculated)
-0.294
Length
423 amino acids
Sequence
(BLAST)
001: MDKASPAVAA VPFRPFPDPK LEFAGIRSYC STSLPESTCS GEESMKDSSF IKINNMRQGS TTSSSSRLAD VTVDISAGEE INGSDEFDPR STAQSEKRVL
101: SRTESRSLFE FKSVPLYGVT SICGRRSEME DSVSAIPRFL QVSLLDCGRV ANGLNPHSSA HFFGVYDGHG GSQVADYCRE RMHLALTEEI LKEKPEFCDG
201: DTWQEKWKRA LFSSFMRVDL ELDFVPETVG STSVVAVVFP THIFVSNCGD SRAVLCRGKT PLALSVDHKP DREDEAARIE VAGGKVIQWN GARVFGVLAM
301: SRSIAGDKYL KPSVIPDPDV TSIRRVKEDD CLILASDGLW DVMTNEEVCD MARKRILLWH KKNAMAGDAL LPAEKRGEGK DPAAMSAAEY LSKMALQRGS
401: KDNISVIVVD LKGIRKFKSK ALN
Best Arabidopsis Sequence Match ( AT5G57050.1 )
(BLAST)
001: MDEVSPAVAV PFRPFTDPHA GLRGYCNGES RVTLPESSCS GDGAMKDSSF EINTRQDSLT SSSSAMAGVD ISAGDEINGS DEFDPRSMNQ SEKKVLSRTE
101: SRSLFEFKCV PLYGVTSICG RRPEMEDSVS TIPRFLQVSS SSLLDGRVTN GFNPHLSAHF FGVYDGHGGS QVANYCRERM HLALTEEIVK EKPEFCDGDT
201: WQEKWKKALF NSFMRVDSEI ETVAHAPETV GSTSVVAVVF PTHIFVANCG DSRAVLCRGK TPLALSVDHK PDRDDEAARI EAAGGKVIRW NGARVFGVLA
301: MSRSIGDRYL KPSVIPDPEV TSVRRVKEDD CLILASDGLW DVMTNEEVCD LARKRILLWH KKNAMAGEAL LPAEKRGEGK DPAAMSAAEY LSKMALQKGS
401: KDNISVVVVD LKGIRKFKSK SLN
Arabidopsis Description
ABI2AtABI2 [Source:UniProtKB/TrEMBL;Acc:A0A178UGB7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.