Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015579.1-P | Field mustard | nucleus | 98.97 | 90.61 |
| CDY10275 | Canola | nucleus | 92.82 | 84.19 |
| CDY06259 | Canola | nucleus | 85.64 | 76.61 |
| AT1G07430.1 | Thale cress | nucleus | 82.82 | 73.08 |
| CDY36606 | Canola | nucleus | 42.82 | 66.8 |
| CDY18067 | Canola | cytosol | 9.74 | 64.41 |
| CDY40181 | Canola | cytosol | 59.49 | 63.39 |
| CDY45436 | Canola | cytosol | 59.23 | 63.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 44.36 | 61.13 |
| KXG35986 | Sorghum | cytosol, peroxisome, plastid | 30.77 | 59.11 |
| CDY67257 | Canola | nucleus | 53.08 | 55.8 |
| CDY67227 | Canola | cytosol | 53.08 | 55.8 |
| VIT_06s0004g05460.t01 | Wine grape | nucleus | 54.62 | 54.2 |
| CDX80307 | Canola | nucleus, plastid | 54.1 | 53.28 |
| CDY33008 | Canola | nucleus, plastid | 53.85 | 53.16 |
| TraesCS5A01G183600.1 | Wheat | peroxisome | 47.18 | 52.72 |
| TraesCS5B01G182000.1 | Wheat | peroxisome | 46.92 | 52.44 |
| Zm00001d005609_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 46.92 | 52.29 |
| CDY08530 | Canola | nucleus | 52.56 | 52.16 |
| EER96576 | Sorghum | cytosol | 47.69 | 52.1 |
| GSMUA_Achr5P29000_001 | Banana | cytosol | 51.03 | 52.09 |
| Solyc06g076400.2.1 | Tomato | nucleus | 54.62 | 51.95 |
| TraesCS5D01G188600.1 | Wheat | peroxisome | 46.41 | 51.86 |
| Os09t0325700-01 | Rice | cytosol | 47.44 | 51.68 |
| CDY01017 | Canola | nucleus | 52.05 | 51.65 |
| GSMUA_Achr11P... | Banana | cytosol | 51.79 | 51.14 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 48.21 | 50.81 |
| Zm00001d020100_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 46.41 | 50.56 |
| TraesCS3D01G355900.1 | Wheat | plastid | 49.49 | 48.61 |
| HORVU3Hr1G085930.3 | Barley | nucleus, plastid | 48.72 | 48.35 |
| TraesCS3A01G362200.1 | Wheat | nucleus, plastid | 48.46 | 48.34 |
| Zm00001d042886_P001 | Maize | nucleus | 49.49 | 47.3 |
| Os03t0268600-01 | Rice | nucleus | 48.97 | 47.28 |
| HORVU4Hr1G060370.1 | Barley | nucleus | 47.95 | 46.75 |
| Os01t0846300-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 49.49 | 46.62 |
| Zm00001d012401_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 49.23 | 46.49 |
| Zm00001d028574_P001 | Maize | nucleus | 47.18 | 46.46 |
| EES01744 | Sorghum | plastid | 48.97 | 46.36 |
| EER92493 | Sorghum | nucleus | 47.18 | 45.89 |
| TraesCS4B01G210100.1 | Wheat | nucleus | 47.69 | 45.81 |
| TraesCS4A01G094300.1 | Wheat | nucleus | 47.95 | 45.72 |
| TraesCS4D01G210900.1 | Wheat | nucleus | 47.69 | 45.37 |
| TraesCS3B01G394600.3 | Wheat | plastid | 48.46 | 44.16 |
| CDY50002 | Canola | cytosol | 18.21 | 41.52 |
| KXG22152 | Sorghum | nucleus | 46.67 | 39.22 |
| CDX83901 | Canola | cytosol | 32.56 | 36.29 |
| CDY38877 | Canola | cytosol | 37.69 | 36.21 |
| CDX96761 | Canola | cytosol | 32.31 | 36.0 |
| CDY32620 | Canola | cytosol | 35.64 | 35.55 |
| CDX92752 | Canola | cytosol | 36.92 | 35.12 |
| CDX94382 | Canola | cytosol | 37.69 | 35.0 |
| CDY50003 | Canola | nucleus | 36.67 | 34.88 |
| CDY42756 | Canola | cytosol | 36.92 | 34.87 |
| CDX89368 | Canola | cytosol | 37.69 | 34.51 |
| CDY14318 | Canola | nucleus | 36.92 | 34.12 |
| CDY38260 | Canola | cytosol | 36.67 | 33.89 |
| CDY54381 | Canola | cytosol, mitochondrion, plastid | 36.67 | 33.81 |
| CDY48313 | Canola | cytosol | 37.69 | 29.34 |
| CDY26234 | Canola | cytosol | 37.18 | 29.23 |
| CDX96432 | Canola | cytosol, peroxisome, plastid | 35.38 | 28.51 |
| CDX72943 | Canola | cytosol, peroxisome, plastid | 34.62 | 28.42 |
| PGSC0003DMT400049695 | Potato | extracellular | 3.33 | 11.82 |
| CDY53715 | Canola | plasma membrane, vacuole | 21.28 | 8.02 |
| CDX93912 | Canola | plasma membrane, vacuole | 21.28 | 8.01 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:A0A078EXD1 | EnsemblPlants:CDY06705 |
| ProteinID:CDY06705 | ProteinID:CDY06705.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004721 | GO:GO:0004722 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00122885001 | InterPro:IPR001932 |
| InterPro:IPR036457 | PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom |
| ScanProsite:PS01032 | PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF518 | SMART:SM00332 | SUPFAM:SSF81606 |
| UniParc:UPI0004EF2370 | SEG:seg | : | : | : | : |
Description
BnaA10g04840D
Coordinates
chrLK031972:-:384723..386171
Molecular Weight (calculated)
43861.7 Da
IEP (calculated)
5.836
GRAVY (calculated)
-0.581
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MADICYDDEP SWSNRRRMIG VHRCRISPSE MHQTAVEDSE GVYKRNKQEE NDIMNCASSP SRSSPDSEAE ESVLLDVEIT RDDVDAGEDS SVIPSKKTAR
101: ETDPRPRYGA ASVCGRRRDM EDAVAIHPSF VRKQTEFSRA KWHYFGVYDG HGCSHVATRC KERLHEIVQE EALSDRKEEW KKMMERSFMR MDNEVVRWGE
201: TVMSANCRCE LQTPDCDAVG STAVVSVITP EKIIVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELYRIE EAGGRVIYWD GPRVLGVLAM SRAIGDNYLK
301: PYVSSEPEVT VTDRTEEDEF LILASDGLWD VVTNEAACAM VHMYLSKRGG RGACTEASVL LTKLALAKHS SDNVSVVVID LRRRKKRHVS
101: ETDPRPRYGA ASVCGRRRDM EDAVAIHPSF VRKQTEFSRA KWHYFGVYDG HGCSHVATRC KERLHEIVQE EALSDRKEEW KKMMERSFMR MDNEVVRWGE
201: TVMSANCRCE LQTPDCDAVG STAVVSVITP EKIIVANCGD SRAVLCRNGK PVPLSTDHKP DRPDELYRIE EAGGRVIYWD GPRVLGVLAM SRAIGDNYLK
301: PYVSSEPEVT VTDRTEEDEF LILASDGLWD VVTNEAACAM VHMYLSKRGG RGACTEASVL LTKLALAKHS SDNVSVVVID LRRRKKRHVS
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.