Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G094300.1 | Wheat | nucleus | 96.59 | 96.82 |
| TraesCS4B01G210100.1 | Wheat | nucleus | 95.85 | 96.8 |
| HORVU4Hr1G060370.1 | Barley | nucleus | 90.0 | 92.25 |
| Os03t0268600-01 | Rice | nucleus | 76.83 | 77.97 |
| Zm00001d028574_P001 | Maize | nucleus | 73.41 | 76.01 |
| EER92493 | Sorghum | nucleus | 72.2 | 73.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 43.17 | 62.54 |
| CDY18067 | Canola | cytosol | 8.54 | 59.32 |
| GSMUA_Achr6P15180_001 | Banana | cytosol | 52.44 | 58.11 |
| TraesCS5D01G188600.1 | Wheat | peroxisome | 48.78 | 57.31 |
| TraesCS3D01G355900.1 | Wheat | plastid | 52.44 | 54.16 |
| CDY67257 | Canola | nucleus | 48.05 | 53.1 |
| CDY67227 | Canola | cytosol | 48.05 | 53.1 |
| VIT_06s0004g05460.t01 | Wine grape | nucleus | 50.24 | 52.42 |
| KRH31027 | Soybean | cytosol | 51.22 | 52.37 |
| KRH73525 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 13.41 | 51.89 |
| Bra002038.1-P | Field mustard | nucleus | 48.05 | 51.84 |
| KRG97855 | Soybean | cytosol | 50.49 | 51.75 |
| VIT_13s0019g02200.t01 | Wine grape | plastid | 50.0 | 51.25 |
| AT3G11410.1 | Thale cress | cytosol | 49.76 | 51.13 |
| KRH15068 | Soybean | cytosol | 49.76 | 51.0 |
| CDY01017 | Canola | nucleus | 48.29 | 50.38 |
| Solyc05g052980.2.1 | Tomato | nucleus | 50.24 | 50.37 |
| CDY08530 | Canola | nucleus | 48.05 | 50.13 |
| KRH73067 | Soybean | cytosol | 49.76 | 50.12 |
| Solyc03g096670.2.1 | Tomato | nucleus | 49.51 | 50.0 |
| Bra002594.1-P | Field mustard | plastid | 50.24 | 50.0 |
| AT2G29380.1 | Thale cress | nucleus | 44.15 | 50.0 |
| Bra034845.1-P | Field mustard | nucleus | 48.54 | 49.87 |
| Bra018398.1-P | Field mustard | cytosol | 44.39 | 49.73 |
| CDY45436 | Canola | cytosol | 44.15 | 49.45 |
| CDY40181 | Canola | cytosol | 44.15 | 49.45 |
| AT5G59220.1 | Thale cress | nucleus | 49.51 | 49.15 |
| PGSC0003DMT400043146 | Potato | nucleus | 49.02 | 49.02 |
| CDY33008 | Canola | nucleus, plastid | 46.83 | 48.61 |
| CDX80307 | Canola | nucleus, plastid | 46.83 | 48.48 |
| PGSC0003DMT400069947 | Potato | cytosol | 49.27 | 48.33 |
| CDY06705 | Canola | nucleus | 45.37 | 47.69 |
| PGSC0003DMT400077989 | Potato | cytosol | 47.32 | 47.32 |
| Solyc06g076400.2.1 | Tomato | nucleus | 46.59 | 46.59 |
| CDY10275 | Canola | nucleus | 47.8 | 45.58 |
| Bra015579.1-P | Field mustard | nucleus | 46.83 | 45.07 |
| AT1G07430.1 | Thale cress | nucleus | 48.54 | 45.02 |
| Bra031574.1-P | Field mustard | nucleus | 47.8 | 44.95 |
| CDY06259 | Canola | nucleus | 47.56 | 44.72 |
| TraesCS3D01G238000.1 | Wheat | cytosol, nucleus, plastid | 42.68 | 43.75 |
| TraesCS1D01G419000.1 | Wheat | nucleus | 40.0 | 43.5 |
| Bra030455.1-P | Field mustard | cytosol | 15.12 | 38.99 |
| TraesCS7D01G042600.1 | Wheat | cytosol | 30.73 | 36.73 |
| TraesCS2D01G000300.1 | Wheat | cytosol | 39.02 | 35.24 |
| CDY36606 | Canola | nucleus | 21.22 | 34.8 |
| TraesCS3D01G249000.1 | Wheat | cytosol | 31.71 | 34.3 |
| TraesCS1D01G363500.1 | Wheat | cytosol | 31.95 | 34.29 |
| TraesCS1D01G449700.1 | Wheat | cytosol | 34.15 | 34.15 |
| TraesCS7D01G042300.1 | Wheat | cytosol | 30.73 | 34.05 |
| TraesCS3D01G153200.1 | Wheat | nucleus, peroxisome, plastid | 25.61 | 29.91 |
| TraesCS3D01G212100.1 | Wheat | peroxisome, plasma membrane, vacuole | 33.9 | 29.2 |
| TraesCS3D01G153000.1 | Wheat | peroxisome | 20.98 | 28.1 |
| TraesCS7D01G390600.1 | Wheat | plasma membrane | 20.0 | 7.69 |
| PGSC0003DMT400049695 | Potato | extracellular | 1.71 | 6.36 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | MapMan:18.4.24.2.1 | Gene3D:3.60.40.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004722 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0043169 | InterPro:IPR001932 | InterPro:IPR036457 |
| PFAM:PF00481 | InterPro:PP2C | InterPro:PP2C_BS | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | ScanProsite:PS01032 |
| PFscan:PS51746 | PANTHER:PTHR13832 | PANTHER:PTHR13832:SF518 | SMART:SM00332 | SUPFAM:SSF81606 | EnsemblPlantsGene:TraesCS4D01G210900 |
| EnsemblPlants:TraesCS4D01G210900.1 | TIGR:cd00143 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4D:+:363246743..363248218
Molecular Weight (calculated)
44067.4 Da
IEP (calculated)
6.303
GRAVY (calculated)
-0.529
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEIRRDVPE GAGAGAEGKG AESHVGSRAA RRRRMEIRRH RLVAERGAEE VSRKRRKLDE ESSSTDEEEI EPAKYGVTSV CGRRRDMEDA VSIRPEFLPG
101: HHFFGVFDGH GCSHVATSCG ERMHEIVVEE AGGARSSGSD DADRWMGVME RSFARMDAEA VSSRSRASGA PTCRCELQLP KCDHVGSTAV VAVVGPRHLV
201: VANCGDSRAV IGRGGAAIPL SSDHKPDRPD ELERIQAAGG RVIFWDGARV FGVLAMSRAI GDSYLKPFVI PDPEVRVLER KDGDDEFLIL ASDGLWDVVS
301: NEVACHVVRS CVRSKAKRRG GRSSPTSNLS PRQSSGSGSG SGSSSGDEAQ NDGGGCADAR SDSDDEESGE EVDEACAEAA ILLTKLAIAR QSSDNVSVVV
401: VNLRRRRPRF
101: HHFFGVFDGH GCSHVATSCG ERMHEIVVEE AGGARSSGSD DADRWMGVME RSFARMDAEA VSSRSRASGA PTCRCELQLP KCDHVGSTAV VAVVGPRHLV
201: VANCGDSRAV IGRGGAAIPL SSDHKPDRPD ELERIQAAGG RVIFWDGARV FGVLAMSRAI GDSYLKPFVI PDPEVRVLER KDGDDEFLIL ASDGLWDVVS
301: NEVACHVVRS CVRSKAKRRG GRSSPTSNLS PRQSSGSGSG SGSSSGDEAQ NDGGGCADAR SDSDDEESGE EVDEACAEAA ILLTKLAIAR QSSDNVSVVV
401: VNLRRRRPRF
001: MADICYEDET SACESRPLWS SRKWRIGVQR FRMSPSEMNP TASTTEEEDK SEGIYNKRNK QEEYDFMNCA SSSPSQSSPE EESVSLEDSD VSISDGNSSV
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
101: NDVAVIPSKK TVKETDLRPR YGVASVCGRR RDMEDAVALH PSFVRKQTEF SRTRWHYFGV YDGHGCSHVA ARCKERLHEL VQEEALSDKK EEWKKMMERS
201: FTRMDKEVVR WGETVMSANC RCELQTPDCD AVGSTAVVSV ITPEKIIVAN CGDSRAVLCR NGKAVPLSTD HKPDRPDELD RIQEAGGRVI YWDGARVLGV
301: LAMSRAIGDN YLKPYVTSEP EVTVTDRTEE DEFLILATDG LWDVVTNEAA CTMVRMCLNR KSGRGRRRGE TQTPGRRSEE EGKEEEEKVV GSRKNGKRGE
401: ITDKACTEAS VLLTKLALAK HSSDNVSVVV IDLRRRRKRH VA
Arabidopsis Description
AIP1Protein phosphatase 2C 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.