Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G195400.1 | Wheat | plastid | 85.8 | 87.02 |
| TraesCS6D01G156700.3 | Wheat | plastid | 84.6 | 85.11 |
| HORVU6Hr1G034070.2 | Barley | plastid | 84.6 | 85.11 |
| Os02t0194000-01 | Rice | nucleus | 49.8 | 61.63 |
| EES04686 | Sorghum | plastid | 59.2 | 59.44 |
| Zm00001d053687_P001 | Maize | plastid | 58.6 | 58.48 |
| GSMUA_AchrUn_... | Banana | plastid | 45.6 | 46.15 |
| KRH60872 | Soybean | nucleus | 39.4 | 40.7 |
| KRH51554 | Soybean | nucleus | 39.0 | 39.71 |
| VIT_18s0122g00670.t01 | Wine grape | nucleus, plastid | 38.2 | 38.82 |
| CDY37705 | Canola | plastid | 35.2 | 38.34 |
| AT2G33610.1 | Thale cress | nucleus | 35.8 | 38.17 |
| CDY23721 | Canola | plastid | 35.0 | 38.13 |
| Bra021864.1-P | Field mustard | plastid | 34.8 | 37.91 |
| Solyc04g082760.2.1 | Tomato | nucleus | 35.2 | 35.99 |
| PGSC0003DMT400025895 | Potato | nucleus | 35.8 | 35.87 |
| TraesCS4A01G218700.1 | Wheat | cytosol, nucleus, plastid | 13.6 | 15.6 |
| TraesCS5A01G113500.1 | Wheat | nucleus | 22.4 | 14.16 |
| TraesCS4A01G261600.1 | Wheat | nucleus | 21.2 | 11.43 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.10.10.60 | MapMan:12.4.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:IPR007526 | InterPro:IPR017884 | InterPro:IPR036388 | PFAM:PF00249 |
| PFAM:PF04433 | PFAM:PF16495 | PFscan:PS50934 | PFscan:PS51293 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF44 |
| InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | InterPro:SMARCC_C | SUPFAM:SSF46689 | InterPro:SWIRM |
| EnsemblPlantsGene:TraesCS6A01G167800 | EnsemblPlants:TraesCS6A01G167800.1 | InterPro:WH-like_DNA-bd_sf | TIGR:cd00167 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:172111802..172116643
Molecular Weight (calculated)
54700.4 Da
IEP (calculated)
6.096
GRAVY (calculated)
-0.447
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPPAPVPS ATANSAPTPT QSPFKARPFS QPPSTAGTLK TEIPPASTSA ATAAGVAAVG AAAEDSSHVI TVPSYAGWFS YDSISDTERR LLPEFFEGEV
101: AAVSGSRGPE AYKYYRNTLV KRFRARPARR LTLTEARRGL IGDVGSVRRV FDFLEEWGLI NHGAPPLGAK QGKDKREEAT TSQSSSQSSL PAGPTTPKKL
201: CVGCRSVCGS AYFTCEKADI SICCRCFVRG NYRPGLTPAD FKKVEISEDA KSDWTDKETL HLLEAVLHYG EDWKKVSEHV GSRSEKDCIA RLIRLYFGEQ
301: FMGSKEQKME FEIDDVTNES RAEIPNRLRL TPLADASNPI MAQVAFLSAI VGAGVAAAAA QAAISAQSQV DMNDSQTDSP ISSTKEEVFS AESSYTNGLT
401: ANDLLKEAST NAQVQLQKEQ KDIEQSLSAI VDVQMKEIQD KISRFEQKEL LMEKEREQLH HLRELLFVDQ LAVVQHQRRP HAVAAENKEE EKPKPIITMS
101: AAVSGSRGPE AYKYYRNTLV KRFRARPARR LTLTEARRGL IGDVGSVRRV FDFLEEWGLI NHGAPPLGAK QGKDKREEAT TSQSSSQSSL PAGPTTPKKL
201: CVGCRSVCGS AYFTCEKADI SICCRCFVRG NYRPGLTPAD FKKVEISEDA KSDWTDKETL HLLEAVLHYG EDWKKVSEHV GSRSEKDCIA RLIRLYFGEQ
301: FMGSKEQKME FEIDDVTNES RAEIPNRLRL TPLADASNPI MAQVAFLSAI VGAGVAAAAA QAAISAQSQV DMNDSQTDSP ISSTKEEVFS AESSYTNGLT
401: ANDLLKEAST NAQVQLQKEQ KDIEQSLSAI VDVQMKEIQD KISRFEQKEL LMEKEREQLH HLRELLFVDQ LAVVQHQRRP HAVAAENKEE EKPKPIITMS
001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC
Arabidopsis Description
SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.