Factsheet for VIT_18s0122g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g01850.t01
VIT_13s0019g02200.t01
VIT_18s0001g02160.t01
VIT_18s0001g02190.t01
VIT_18s0122g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33610.1	VIT_18s0001g02160.t01	AT1G21700.1	12140326
AT2G33610.1	VIT_18s0001g02190.t01	AT1G21700.1	12140326
AT2G33610.1	VIT_18s0001g02160.t01	AT1G21700.1	16845477
AT2G33610.1	VIT_18s0001g02190.t01	AT1G21700.1	16845477
AT2G33610.1	VIT_09s0002g01850.t01	AT1G72770.1	19033529
AT2G33610.1	VIT_18s0122g00670.t01	AT2G33610.1	12140326
AT2G33610.1	VIT_18s0122g00670.t01	AT2G33610.1	16845477
AT2G33610.1	VIT_13s0019g02200.t01	AT3G11410.1	19033529

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51554	Soybean	nucleus	51.83	51.93
AT2G33610.1	Thale cress	nucleus	48.58	50.96
CDY37705	Canola	plastid	47.36	50.76
KRH60872	Soybean	nucleus	49.8	50.62
CDY23721	Canola	plastid	46.54	49.89
Bra021864.1-P	Field mustard	plastid	46.14	49.46
Solyc04g082760.2.1	Tomato	nucleus	47.36	47.65
PGSC0003DMT400025895	Potato	nucleus	47.97	47.29
GSMUA_AchrUn_...	Banana	plastid	44.11	43.93
TraesCS6D01G156700.3	Wheat	plastid	39.23	38.83
Zm00001d053687_P001	Maize	plastid	39.23	38.52
EES04686	Sorghum	plastid	38.82	38.35
TraesCS6A01G167800.1	Wheat	plastid	38.82	38.2
TraesCS6B01G195400.1	Wheat	plastid	38.21	38.13
HORVU6Hr1G034070.2	Barley	plastid	38.41	38.03
Os02t0194000-01	Rice	nucleus	29.88	36.39
VIT_17s0000g00990.t01	Wine grape	cytosol	27.44	23.98
VIT_18s0001g02160.t01	Wine grape	nucleus	14.23	15.8
VIT_18s0001g02190.t01	Wine grape	nucleus	10.77	14.72
VIT_03s0063g02410.t01	Wine grape	nucleus	22.76	10.95

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100258194	wikigene:100258194	MapMan:12.4.2.1	EMBL:AM434559
ProteinID:CAN64878	ProteinID:CAN64878.1	ProteinID:CBI40767	ProteinID:CBI40767.3	UniProt:D7UDF2	EMBL:FN596759
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	EntrezGene:LOC100258194	wikigene:LOC100258194	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF44	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	TIGR:TC64239	UniParc:UPI00019851B9
ArrayExpress:VIT_18s0122g00670	EnsemblPlantsGene:VIT_18s0122g00670	EnsemblPlants:VIT_18s0122g00670.t01	unigene:Vvi.17378	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002275451
RefSeq:XP_002275451.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:531683..535425

Molecular Weight (calculated)

54257.9 Da

IEP (calculated)

6.091

GRAVY (calculated)

-0.416

Length

492 amino acids

Sequence
(BLAST)

001: MAAQSPIKDP IGASTETLTQ QPDSSSSIIP TVKSEIPVAA SASPSVGIVP RASEPETINI PSYSRWFSWN NVHECEVRFL PEFFDARSPS KNPRVYKYYR
101: NSIILSFRQN PSRKLTFTDV RKILVGDVGS IRRVFDFLEA WGLINYSGSA LKQPLKWEEK DNKSGGASSH TGDAGGGAVE SIPKRRWCSG CKSLCSIACF
201: ACDKFDLTLC ARCYVRGNYR VGVNSSDFRR VEISEDTKAG WTDKETLHLL EAVLHYGDDW KKVAEHVGGR NEKECVTHFI KLSFGEQYLG HTSSGDVDNK
301: FSQAKDQSDA GFGQENIGTS SASKKMRLTP LSDASNPIMA QAAFLSALVG VEVAEAAARA AVASLSDVDP RKMKEGLGSF ANGARIQDPN VESNGNTTSN
401: VLEGAYVDAK SLLEREELDV ERAISGITEV QMKEIRDKIV HFEEFELHME KEWQQLQQMK NLLFVDQLTL LFQKAAAPKT GELMGGENVR TD

Best Arabidopsis Sequence Match ( AT2G33610.1 )
(BLAST)

001: MAMKAPDPGG SGEILPSTPS LSETTSGGAA AASKSAQLPS SSSDIDNIHV PSYSSWFSWT DINDCEVRSL PEFFDSRSSS KNPKFYLYLR NSIIKQYRDD
101: HPRKISFTDV RRTLVSDVVS IRRVFDFLDS WGLINYNSSA SAKPLKWEEK EAGKSAGDAA SEPATTVKET AKRNCNGCKA ICSIACFACD KYDLTLCARC
201: YVRSNYRVGI NSSEFKRVEI SEESKPEWSD KEILLLLEAV MHYGDDWKKV ASHVIGRTEK DCVSQFVKLP FGEQFVKESD SEDGLEMFDQ IKDSDIPESE
301: GIDKDGSSPN KRIKLTPLAD ASNPIMAQAA FLSALAGTNV AEAAARAAVR ALSDVDYEAD KNASRDPNRQ DANAASSGET TRNESERAWA DAKSLIEKEE
401: HEVEGAIKET VEVEMKKIRD RIVHFEKLDL EMERSRKQLE EVRNLLFVDQ LNIFFHTRKA RKTEDRIEC

Arabidopsis Description

SWI3BSWI/SNF complex subunit SWI3B [Source:UniProtKB/Swiss-Prot;Acc:Q84JG2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.