Factsheet for VIT_17s0000g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g00990.t01
VIT_18s0001g02160.t01
VIT_18s0001g02190.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	VIT_18s0001g02160.t01	AT1G21700.1	16055636
AT2G47620.1	VIT_18s0001g02190.t01	AT1G21700.1	16055636
AT2G47620.1	VIT_17s0000g00990.t01	AT2G47620.1	16055636

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53340	Soybean	nucleus	50.09	53.92
KRH64580	Soybean	nucleus	49.02	52.37
AT2G47620.1	Thale cress	nucleus	44.05	48.44
CDX95728	Canola	nucleus	42.81	48.39
CDX83324	Canola	nucleus	42.1	48.17
CDY66036	Canola	nucleus	42.98	46.63
Solyc03g097450.2.1	Tomato	nucleus	47.07	46.25
Bra004441.1-P	Field mustard	nucleus	41.74	45.72
CDX80122	Canola	nucleus	41.39	45.51
GSMUA_Achr9P16230_001	Banana	nucleus	41.39	40.38
Os04t0480300-01	Rice	cytosol	37.3	37.5
EES10999	Sorghum	nucleus	36.06	36.58
TraesCS2B01G356600.1	Wheat	nucleus	35.88	36.27
TraesCS2D01G337400.1	Wheat	nucleus	35.35	35.79
HORVU2Hr1G082880.12	Barley	nucleus	21.31	31.58
VIT_18s0122g00670.t01	Wine grape	nucleus, plastid	23.98	27.44
Zm00001d003284_P001	Maize	nucleus	33.75	21.54
VIT_18s0001g02160.t01	Wine grape	nucleus	13.85	17.61
VIT_18s0001g02190.t01	Wine grape	nucleus	10.48	16.39
VIT_03s0063g02410.t01	Wine grape	nucleus	19.36	10.65

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	EntrezGene:100250960	wikigene:100250960	MapMan:12.4.2.1	EMBL:AM447939
ProteinID:CAN80839	ProteinID:CAN80839.1	ProteinID:CBI15704	ProteinID:CBI15704.3	UniProt:D7SH24	EMBL:FN594950
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884
InterPro:IPR036388	EntrezGene:LOC100250960	wikigene:LOC100250960	PFAM:PF00249	PFAM:PF04433	PFAM:PF16495
PFscan:PS50934	PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	UniParc:UPI000198500B	ArrayExpress:VIT_17s0000g00990
EnsemblPlantsGene:VIT_17s0000g00990	EnsemblPlants:VIT_17s0000g00990.t01	unigene:Vvi.24684	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002280389	RefSeq:XP_002280389.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:717777..722763

Molecular Weight (calculated)

62383.7 Da

IEP (calculated)

4.910

GRAVY (calculated)

-0.438

Length

563 amino acids

Sequence
(BLAST)

001: MESTPDPSSK LTRHDEPELD LYTIPIHSSW FSWDEIHEKE KISLKEFFDG SSISRTPKIY KEYRDFIISK YREDPSRRLT FAEIRKSLVG DVSLLHKVFL
101: FLERWGLINF GAPGGEDSAA VAEGAERHRV RSEDGAPNGI RVVAMPNSLK PITMPLTLDV NGEVDENGFR LPPLASYSDV FSDLTKEKGL VCGNCGDNCD
201: SGHYNCLKGS PVICVKCFKN GNYGENRSVD DFKFNDCNEN RGNRGAVWTE AETLLLLESV LKHGDDWELV VQNVQTKTKL DCISKLIELP FGELMLGSSL
301: GKSRASNDNT SSIKPVQTSL ESQENIKNGG QGDEQINESE QNGDAENQGP PLKRKCITSL SDAGISLMRQ VAVISTMVGP HISAAAADAA VAALCDENPC
401: VKDIFDGAED NVTEELGSPI RNNKLERSLM VEDSEINERP ILSEIQKTSS EKNAIPLPLQ MRAAIATALG AAAANAKSLA DQEHREIEHL VATIIETQMK
501: KLHCKIQHFE DLELIMEKEY THLKELKESI IAERIDILQR VFNAGISRWR DPISVKSHTG SVS

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.