Factsheet for Zm00001d003284_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000110_P003
Zm00001d003284_P001
Zm00001d003672_P001
Zm00001d011816_P001
Zm00001d025413_P001
Zm00001d041847_P002
Zm00001d042023_P001
Zm00001d048305_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47620.1	Zm00001d000110_P003	AT1G21700.1	16055636
AT2G47620.1	Zm00001d041847_P002	AT1G21700.1	16055636
AT2G47620.1	Zm00001d003284_P001	AT2G47620.1	16055636
AT2G47620.1	Zm00001d003672_P001	AT5G52650.1	21798944
AT2G47620.1	Zm00001d011816_P001	AT5G52650.1	21798944
AT2G47620.1	Zm00001d025413_P001	AT5G52650.1	21798944
AT2G47620.1	Zm00001d042023_P001	AT5G52650.1	21798944
AT2G47620.1	Zm00001d048305_P001	AT5G52650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10999	Sorghum	nucleus	44.22	70.27
Os04t0480300-01	Rice	cytosol	41.61	65.54
TraesCS2D01G337400.1	Wheat	nucleus	39.57	62.77
TraesCS2B01G356600.1	Wheat	nucleus	39.23	62.12
HORVU2Hr1G082880.12	Barley	nucleus	25.06	58.16
GSMUA_Achr9P16230_001	Banana	nucleus	25.96	39.69
CDX83324	Canola	nucleus	20.52	36.79
CDX95728	Canola	nucleus	20.52	36.35
Bra004441.1-P	Field mustard	nucleus	20.98	35.99
CDX80122	Canola	nucleus	20.75	35.74
AT2G47620.1	Thale cress	nucleus	20.63	35.55
CDY66036	Canola	nucleus	20.86	35.45
KRH53340	Soybean	nucleus	20.98	35.37
KRH64580	Soybean	nucleus	20.41	34.16
VIT_17s0000g00990.t01	Wine grape	cytosol	21.54	33.75
Solyc03g097450.2.1	Tomato	nucleus	19.61	30.19
Zm00001d053687_P001	Maize	plastid	14.17	24.95
Zm00001d000110_P003	Maize	mitochondrion	14.97	16.84
Zm00001d041847_P002	Maize	nucleus	13.72	15.65
Zm00001d013391_P006	Maize	nucleus	13.15	12.71
Zm00001d033825_P001	Maize	nucleus	12.7	12.4
Zm00001d004521_P001	Maize	nucleus, plastid	11.11	11.68

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.60	MapMan:12.4.2.1	UniProt:A0A1D6E8D2	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR007526	InterPro:IPR017884	InterPro:IPR036388
ProteinID:ONM16678.1	PFAM:PF00249	PFAM:PF04433	PFAM:PF05477	PFAM:PF16495	PFscan:PS50934
PFscan:PS51293	PANTHER:PTHR12802	PANTHER:PTHR12802:SF41	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
InterPro:SMARCC_C	SUPFAM:SSF46689	InterPro:SWIRM	InterPro:Surf2	UniParc:UPI0008454937	InterPro:WH-like_DNA-bd_sf
EnsemblPlantsGene:Zm00001d003284	EnsemblPlants:Zm00001d003284_P001	EnsemblPlants:Zm00001d003284_T001	SEG:seg	:	:

Description

MYB-related-transcription factor 93SWI/SNF complex subunit SWI3A

Coordinates

chr2:-:38748934..38756211

Molecular Weight (calculated)

96756.5 Da

IEP (calculated)

5.919

GRAVY (calculated)

-0.620

Length

882 amino acids

Sequence
(BLAST)

001: MSPPAAGAAA NSGDGTPPSP RELYTIPASS GWFRWDGIHE TERRALPEFF GGAGGAGFGT ATRNPRIYRE YRDFIIAKYR EDPARRLTFT EVRRALVGDV
101: TLLRKLFAFL DSSGLINFSA SSSSVPASRQ QEVGVVVEAP VGLQVTPRPP ASYFAEEKRV AAGGEKENEF RLPPLTSYSD VFGEWAPGKA PICGFCGEEC
201: NGADVETLQI IIAMGDEKHI FSFGPDDKDG FKVCSKCSKS NNDNIKEEAN KCPGDKKENM ENHASSAWTD TETLLLLEGV LKHGDDWDLI AQHVRTKNKS
301: ECIAMLIQLP FGEHMLGTIN GKFVSRLHIN QTDDGKTNQH IMESSSHSTE MADGMQIDGS EDSADKSVEE YPTKRRRLFF SMDATTSLME QLAILTTAAS
401: PDVAAAAADA AIKAFGNENP QARKAFRLNE QEYKTKAFAS NHVQQIDHKV SNKDTAMHGQ SGSDKQEKKF IASAYQLRAA VATAVGVAAA RAKMLADQEE
501: REMELLMASV IETQLRKMQY KIKHFEELDS LMDQEYTAIQ QMKGSLMNEW IKSEGPSAAA GLRPRQRGAF LLGEPTWEDT GSGRWRCAET GHELPEREKE
601: AYARSRACRL ALIDHAVAHK KPPLNAFKPH PEHNSCEFVR HLPLCEPEGS IGCPLVLVQA QGLNWLCISA SAIPVELGWN YATSTTNCIK PLHHPCVTEK
701: QEDQMTSGEM ADGQSVKSNE EVAKKSKPSK KYKKKTNVSS PLPGEPKPEM DGSDDRNFWV PPVEGRWDDD DGKKRWELSP GKHTLAKNEG GSDAAAGGGD
801: NDGGDENVTA EKDDAESREL ASMTKQISSW LQLKQQIRAP VSAASFQSST KGPKSQQVES LECQQQVITR AGPEILGAQS KT

Best Arabidopsis Sequence Match ( AT2G47620.1 )
(BLAST)

001: MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN
101: FSSSLKKNDH LLSVDNAKIE QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC GERCDSPFYQ HNKGIVNICE
201: KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301: GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE
401: QQEEKDGPQG LPVALRIRAS VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE GVKETIIQER VSVLQCAFRS
501: GITKRWDHTY VK

Arabidopsis Description

SWI3ASWI/SNF complex subunit SWI3A [Source:UniProtKB/Swiss-Prot;Acc:Q8W475]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.