Factsheet for Zm00001d025413_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d005749_P001
Zm00001d015515_P001
Zm00001d017475_P002
Zm00001d020492_P001
Zm00001d020495_P001
Zm00001d021067_P001
Zm00001d036726_P001
Zm00001d046805_P001
Zm00001d053746_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	Zm00001d002027_P002	AT1G22920.1	21798944
AT4G25740.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G41520.1	Zm00001d005749_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d015515_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d020492_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d020495_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d036726_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d046805_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d053746_P001	AT2G25000.1	21798944
AT5G41520.1	Zm00001d021067_P001	AT3G08530.1	21798944
AT5G52650.1	Zm00001d021067_P001	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003672_P001	Maize	plastid	95.53	94.48
EES10818	Sorghum	cytosol	95.53	92.93
Os02t0549600-01	Rice	cytosol	93.3	91.26
Os04t0430100-01	Rice	nucleus	93.3	91.26
Zm00001d011816_P001	Maize	plastid	84.92	84.92
VIT_16s0050g01160.t01	Wine grape	cytosol	83.8	83.33
Zm00001d042023_P001	Maize	plastid	82.68	82.68
GSMUA_Achr11P...	Banana	cytosol	62.57	81.75
TraesCS2A01G302600.1	Wheat	cytosol	85.47	81.38
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	85.47	81.38
TraesCS2D01G301300.1	Wheat	cytosol	85.47	81.38
GSMUA_Achr2P08200_001	Banana	cytosol	61.45	80.29
Solyc01g099670.2.1	Tomato	nucleus	81.01	79.67
Solyc12g096540.1.1	Tomato	nucleus	79.89	79.44
PGSC0003DMT400063697	Potato	cytosol	80.45	79.12
PGSC0003DMT400075267	Potato	cytosol	79.33	78.89
KRH27894	Soybean	cytosol	79.33	78.89
KRH77585	Soybean	nucleus	79.33	78.45
KRH41234	Soybean	nucleus	78.77	77.9
KRH59964	Soybean	nucleus	78.77	77.05
Zm00001d048305_P001	Maize	cytosol	62.57	76.19
AT4G25740.1	Thale cress	cytosol	74.86	75.71
Bra019143.1-P	Field mustard	cytosol	75.42	74.59
AT5G52650.1	Thale cress	cytosol	74.3	74.3
Bra010448.1-P	Field mustard	cytosol	74.86	74.03
Bra013915.1-P	Field mustard	cytosol	74.3	73.89
Bra029112.1-P	Field mustard	cytosol	71.51	72.32
HORVU0Hr1G004700.1	Barley	mitochondrion	85.47	70.51
Bra003118.1-P	Field mustard	cytosol	69.83	69.83
VIT_02s0025g00310.t01	Wine grape	cytosol	72.63	68.42
Bra025492.1-P	Field mustard	cytosol	68.16	68.16
AT5G41520.1	Thale cress	cytosol	68.16	67.78
CDY27840	Canola	cytosol	72.63	65.99
CDY49476	Canola	cytosol	74.86	64.73
GSMUA_AchrUn_...	Banana	extracellular	81.56	62.66
CDY39734	Canola	cytosol	68.16	62.56
GSMUA_Achr8P08040_001	Banana	unclear	83.8	62.24
CDX89397	Canola	extracellular	73.74	61.97
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	84.36	61.63
CDX92731	Canola	cytosol	75.42	59.21
CDY35037	Canola	cytosol	67.04	58.82
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	71.51	58.72
CDY44470	Canola	cytosol	68.72	58.57
CDX94419	Canola	mitochondrion	74.3	55.42
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	84.92	55.07
CDY51832	Canola	plastid	71.51	54.24
CDY50187	Canola	endoplasmic reticulum, golgi	74.86	53.6
CDY66010	Canola	cytosol	74.3	51.75
CDX67498	Canola	extracellular	68.16	26.12

Protein Annotations

EMBL:BT040198	EnsemblPlants:Zm00001d025413_P001	EnsemblPlants:Zm00001d025413_T001	EnsemblPlantsGene:Zm00001d025413	Gene3D:1.10.10.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:IPR036388	InterPro:Rps10
InterPro:S10_plectin_N	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:AQK43699.1
SEG:seg	UniParc:UPI00017B7BB0	UniProt:B4FSW0	MapMan:17.1.3.1.11	:	:

Description

40S ribosomal protein S10-1

Coordinates

chr10:+:117927675..117930726

Molecular Weight (calculated)

19939.6 Da

IEP (calculated)

10.252

GRAVY (calculated)

-0.880

Length

179 amino acids

Sequence
(BLAST)

001: MIIPKKNRNE ICKYLFKEGV LYAKKDYNLA KHPQIDVPNL QVIKLMQSFK SKEYVRETFS WQYYYWYLTN DGIEHLRNYL NLPSEIVPAT LKKSAKPPGR
101: PFGSGPPGDR PRGPGRFDGD RPRFGDRDGY RGGPRGAPGD FGGDKSGAPA EFQPSFRRPG FGRGGGSGFG AGPTSSSME

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.