Factsheet for PGSC0003DMT400075267

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400019058
PGSC0003DMT400019061

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41520.1	PGSC0003DMT400019058	AT2G25000.1	21798944
AT5G41520.1	PGSC0003DMT400019061	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096540.1.1	Tomato	nucleus	98.33	98.33
PGSC0003DMT400063697	Potato	cytosol	95.56	94.51
VIT_16s0050g01160.t01	Wine grape	cytosol	91.11	91.11
KRH27894	Soybean	cytosol	83.33	83.33
KRH41234	Soybean	nucleus	83.33	82.87
KRH77585	Soybean	nucleus	83.33	82.87
KRH59964	Soybean	nucleus	83.33	81.97
Os01t0962600-01	Rice	plastid	81.11	81.56
Os02t0549600-01	Rice	cytosol	81.67	80.33
Os04t0430100-01	Rice	nucleus	81.67	80.33
GSMUA_Achr11P...	Banana	cytosol	60.56	79.56
Zm00001d025413_P001	Maize	extracellular, mitochondrion	78.89	79.33
Zm00001d011816_P001	Maize	plastid	78.33	78.77
EES10818	Sorghum	cytosol	80.0	78.26
GSMUA_Achr2P08200_001	Banana	cytosol	59.44	78.1
Zm00001d003672_P001	Maize	plastid	78.33	77.9
EES04270	Sorghum	cytosol	77.22	77.65
Zm00001d042023_P001	Maize	plastid	76.67	77.09
AT5G41520.1	Thale cress	cytosol	76.67	76.67
TraesCS2D01G301300.1	Wheat	cytosol	80.0	76.6
TraesCS2A01G302600.1	Wheat	cytosol	79.44	76.06
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	79.44	76.06
Bra025492.1-P	Field mustard	cytosol	75.56	75.98
HORVU3Hr1G111760.2	Barley	mitochondrion	81.11	70.19
CDY39734	Canola	cytosol	75.0	69.23
HORVU0Hr1G004700.1	Barley	mitochondrion	80.56	66.82
Zm00001d048305_P001	Maize	cytosol	53.89	65.99
CDY35037	Canola	cytosol	74.44	65.69
CDY44470	Canola	cytosol	75.56	64.76
GSMUA_AchrUn_...	Banana	extracellular	80.0	61.8
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	81.67	60.0
GSMUA_Achr8P08040_001	Banana	unclear	80.0	59.75
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	82.22	53.62
CDX67498	Canola	extracellular	75.0	28.91

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102577552	MapMan:17.1.3.1.11	ProteinID:ABB55361	ProteinID:ABB55361.1	ProteinID:ABB72819
ProteinID:ABB72819.1	EMBL:DQ252484	EMBL:DQ268860	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	InterPro:IPR036388	RefSeq:NP_001275178.1	PFAM:PF03501	EnsemblPlantsGene:PGSC0003DMG402029274
PGSC:PGSC0003DMG402029274	EnsemblPlants:PGSC0003DMT400075267	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	UniProt:Q2XPV4	InterPro:Rps10
InterPro:S10_plectin_N	UniParc:UPI00005E4787	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

40S ribosomal protein S10 [Source:PGSC_GENE;Acc:PGSC0003DMG402029274]

Coordinates

chr12:-:58178606..58181794

Molecular Weight (calculated)

19843.6 Da

IEP (calculated)

10.254

GRAVY (calculated)

-0.775

Length

180 amino acids

Sequence
(BLAST)

001: MIISEKNRRE ISKYLFQEGV CFAKKDYNLA KHPNIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWYLTN DGIEFLRTYL NLPSEIVPAT LKKSAKPLGR
101: PMGGPPGDRP RGPPRFEGDR PRFGDRDGYR AGPRGPPGEF GGEKGGAPAD YQPAFRGGGG RPGFGRGAGG FGGAPPSSSS

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.