CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97711
KRH05350
KRH14933
KRH15674
KRH31163
KRH52329
KRH61669
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41520.1	KRH05350	AT2G25000.1	21798944
AT5G41520.1	KRH15674	AT2G25000.1	21798944
AT5G41520.1	KRH52329	AT2G25000.1	21798944
AT5G41520.1	KRH61669	AT2G25000.1	21798944
AT5G41520.1	KRG97711	AT3G08530.1	21798944
AT5G41520.1	KRH14933	AT3G08530.1	21798944
AT5G41520.1	KRH31163	AT3G08530.1	21798944
AT5G41520.1	KRH73205	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77585	Soybean	nucleus	100.0	99.45
KRH41234	Soybean	nucleus	94.44	93.92
KRH59964	Soybean	nucleus	95.0	93.44
Solyc01g099670.2.1	Tomato	nucleus	85.0	84.07
Solyc12g096540.1.1	Tomato	nucleus	83.89	83.89
PGSC0003DMT400063697	Potato	cytosol	84.44	83.52
PGSC0003DMT400075267	Potato	cytosol	83.33	83.33
GSMUA_Achr11P...	Banana	cytosol	60.56	79.56
Zm00001d025413_P001	Maize	extracellular, mitochondrion	78.89	79.33
GSMUA_Achr2P08200_001	Banana	cytosol	59.44	78.1
Os02t0549600-01	Rice	cytosol	78.89	77.6
Os04t0430100-01	Rice	nucleus	78.89	77.6
Zm00001d003672_P001	Maize	plastid	77.22	76.8
EES10818	Sorghum	cytosol	78.33	76.63
Os01t0962600-01	Rice	plastid	76.11	76.54
Bra025492.1-P	Field mustard	cytosol	76.11	76.54
AT5G41520.1	Thale cress	cytosol	76.11	76.11
Zm00001d011816_P001	Maize	plastid	75.0	75.42
EES04270	Sorghum	cytosol	72.78	73.18
Zm00001d042023_P001	Maize	plastid	72.78	73.18
TraesCS2D01G301300.1	Wheat	cytosol	75.0	71.81
VIT_02s0025g00310.t01	Wine grape	cytosol	75.56	71.58
TraesCS2A01G302600.1	Wheat	cytosol	74.44	71.28
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	74.44	71.28
CDY39734	Canola	cytosol	75.56	69.74
CDY35037	Canola	cytosol	74.44	65.69
CDY44470	Canola	cytosol	76.11	65.24
HORVU3Hr1G111760.2	Barley	mitochondrion	75.0	64.9
KRH75198	Soybean	cytosol, extracellular	20.0	64.29
Zm00001d048305_P001	Maize	cytosol	52.22	63.95
HORVU0Hr1G004700.1	Barley	mitochondrion	76.11	63.13
GSMUA_AchrUn_...	Banana	extracellular	79.44	61.37
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	82.22	60.41
GSMUA_Achr8P08040_001	Banana	unclear	80.0	59.75
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	82.78	53.99
CDX67498	Canola	extracellular	75.56	29.12

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.1.3.1.11	EMBL:ACUP02006735	EnsemblPlantsGene:GLYMA_11G021700	GO:GO:0000028	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0022627	UniProt:I1LGD6	InterPro:IPR036388	EnsemblPlants:KRH27894
ProteinID:KRH27894	ProteinID:KRH27894.1	PFAM:PF03501	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	InterPro:Rps10
InterPro:S10_plectin_N	UniParc:UPI000233CB3E	InterPro:WH-like_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:+:1543164..1545075

Molecular Weight (calculated)

19859.6 Da

IEP (calculated)

10.102

GRAVY (calculated)

-0.764

Length

180 amino acids

Sequence
(BLAST)

001: MIIPEKNRKE ICKYLFQEGV CFAKKDFNLA KHPEIDVPNL QVIKLMQSFK SREYVRETFA WMHYYWFLTN DGIEFLRTYL NLPSEIVPAT LKKQAKPAGR
101: PFGGPPGDRP RGPPRFDGER RFGGDRDGYR GGPRGPGGDF GDKGGAPADY RPSFGGGPGG RPGFGRGSGG YGAPTSSNIP

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.