Factsheet for GSMUA_Achr11P12000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P10080_001
GSMUA_Achr2P05100_001
GSMUA_Achr3P13440_001
GSMUA_Achr4P01930_001
GSMUA_Achr5P12200_001
GSMUA_Achr5P12210_001
GSMUA_Achr5P16460_001
GSMUA_Achr7P05200_001
GSMUA_Achr7P16090_001
GSMUA_Achr7P19340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25740.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT4G25740.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT5G41520.1	GSMUA_Achr10P...	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr10P...	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr11P...	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr1P10080_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr2P05100_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr3P13440_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr4P01930_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr5P16460_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr7P05200_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr7P16090_001	AT2G25000.1	21798944
AT5G41520.1	GSMUA_Achr7P19340_001	AT2G25000.1	21798944
AT5G52650.1	GSMUA_Achr5P12200_001	AT1G01800.1	21798944
AT5G52650.1	GSMUA_Achr5P12210_001	AT1G01800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P08200_001	Banana	cytosol	94.89	94.89
Os02t0549600-01	Rice	cytosol	86.86	65.03
Os04t0430100-01	Rice	nucleus	86.86	65.03
Os01t0962600-01	Rice	plastid	84.67	64.8
VIT_16s0050g01160.t01	Wine grape	cytosol	84.67	64.44
Zm00001d011816_P001	Maize	plastid	83.94	64.25
EES10818	Sorghum	cytosol	86.13	64.13
Zm00001d003672_P001	Maize	plastid	83.94	63.54
EES04270	Sorghum	cytosol	82.48	63.13
Zm00001d025413_P001	Maize	extracellular, mitochondrion	81.75	62.57
Solyc01g099670.2.1	Tomato	nucleus	81.75	61.54
KRH41234	Soybean	nucleus	81.02	61.33
PGSC0003DMT400063697	Potato	cytosol	81.02	60.99
Zm00001d042023_P001	Maize	plastid	79.56	60.89
KRH59964	Soybean	nucleus	81.02	60.66
KRH27894	Soybean	cytosol	79.56	60.56
Solyc12g096540.1.1	Tomato	nucleus	79.56	60.56
PGSC0003DMT400075267	Potato	cytosol	79.56	60.56
KRH77585	Soybean	nucleus	79.56	60.22
AT4G25740.1	Thale cress	cytosol	74.45	57.63
TraesCS2A01G302600.1	Wheat	cytosol	78.1	56.91
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	78.1	56.91
TraesCS2D01G301300.1	Wheat	cytosol	78.1	56.91
Bra010448.1-P	Field mustard	cytosol	75.18	56.91
Bra019143.1-P	Field mustard	cytosol	74.45	56.35
Bra013915.1-P	Field mustard	cytosol	73.72	56.11
Bra029112.1-P	Field mustard	cytosol	71.53	55.37
AT5G52650.1	Thale cress	cytosol	72.26	55.31
Bra003118.1-P	Field mustard	cytosol	70.8	54.19
HORVU3Hr1G111760.2	Barley	mitochondrion	80.29	52.88
GSMUA_AchrUn_...	Banana	extracellular	89.78	52.79
Bra025492.1-P	Field mustard	cytosol	68.61	52.51
CDY27840	Canola	cytosol	74.45	51.78
AT5G41520.1	Thale cress	cytosol	67.15	51.11
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	91.24	51.02
GSMUA_Achr8P08040_001	Banana	unclear	89.05	50.62
VIT_02s0025g00310.t01	Wine grape	cytosol	70.07	50.53
CDY49476	Canola	cytosol	75.18	49.76
HORVU0Hr1G004700.1	Barley	mitochondrion	77.37	48.85
CDX89397	Canola	extracellular	75.18	48.36
CDY39734	Canola	cytosol	68.61	48.21
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	92.7	46.01
CDY35037	Canola	cytosol	67.88	45.59
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	72.26	45.41
CDY44470	Canola	cytosol	69.34	45.24
CDX92731	Canola	cytosol	74.45	44.74
CDX94419	Canola	mitochondrion	74.45	42.5
CDY51832	Canola	plastid	72.26	41.95
Zm00001d048305_P001	Maize	cytosol	44.53	41.5
CDY50187	Canola	endoplasmic reticulum, golgi	73.72	40.4
CDY66010	Canola	cytosol	75.18	40.08
CDX67498	Canola	extracellular	68.61	20.13
GSMUA_Achr8P32790_001	Banana	mitochondrion	27.01	17.54

Protein Annotations

EnsemblPlants:GSMUA_Achr11P12000_001	EnsemblPlants:GSMUA_Achr11T12000_001	EnsemblPlantsGene:GSMUA_Achr11G12000_001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10
InterPro:S10_plectin_N	InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	SEG:seg
UniParc:UPI0002953495	UniProt:M0RRI0	MapMan:17.1.3.1.11	:	:	:

Description

40S ribosomal protein S10 [Source:GMGC_GENE;Acc:GSMUA_Achr11G12000_001]

Coordinates

chr11:-:10884337..10887228

Molecular Weight (calculated)

14927.4 Da

IEP (calculated)

10.149

GRAVY (calculated)

-1.060

Length

137 amino acids

Sequence
(BLAST)

001: MQSFKSREYV RETFAWQHYY WYLTNDGIEY LRTYLNLPSE IVPATLKKSS RPPPRPFGSG PPGDRPRGPP RFEGDRPRFG DRDGYRGGPR GGPPGDLGGD
101: KGGAPLEFQP SFRGSGGRPG FGRGGGGYGA GPTSSME

Best Arabidopsis Sequence Match ( AT4G25740.1 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.