Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P05200_001 | Banana | nucleus | 59.27 | 58.21 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 37.45 | 54.21 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 37.09 | 53.12 |
| GSMUA_Achr11P... | Banana | nucleus | 45.45 | 51.02 |
| GSMUA_Achr10P... | Banana | nucleus | 52.36 | 50.0 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 39.64 | 46.38 |
| PGSC0003DMT400019061 | Potato | nucleus | 41.82 | 45.45 |
| Solyc08g067340.2.1 | Tomato | nucleus | 41.82 | 45.45 |
| Bra019123.1-P | Field mustard | nucleus | 32.0 | 45.36 |
| GSMUA_Achr10P... | Banana | nucleus | 37.09 | 43.97 |
| Solyc08g067360.2.1 | Tomato | nucleus | 40.73 | 43.41 |
| PGSC0003DMT400019058 | Potato | nucleus | 41.09 | 43.3 |
| KRH61669 | Soybean | nucleus | 34.55 | 43.18 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 34.91 | 43.05 |
| PGSC0003DMT400073710 | Potato | nucleus | 33.45 | 42.4 |
| Solyc12g042590.1.1 | Tomato | nucleus | 33.09 | 42.13 |
| CDX72327 | Canola | nucleus | 42.91 | 41.4 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 50.18 | 41.19 |
| KRH15674 | Soybean | nucleus | 41.82 | 40.78 |
| KRH23643 | Soybean | nucleus | 45.82 | 40.78 |
| KRH47344 | Soybean | nucleus | 45.45 | 40.19 |
| Bra008435.1-P | Field mustard | nucleus | 41.82 | 39.66 |
| CDY22299 | Canola | nucleus | 41.82 | 39.66 |
| AT2G25000.1 | Thale cress | nucleus | 38.91 | 39.48 |
| CDY67287 | Canola | nucleus | 41.45 | 39.31 |
| CDX75196 | Canola | nucleus | 40.36 | 39.22 |
| CDX79347 | Canola | nucleus | 41.82 | 38.59 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 43.64 | 38.59 |
| CDX88573 | Canola | nucleus | 42.18 | 38.54 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 44.36 | 38.49 |
| KRH09652 | Soybean | nucleus | 46.18 | 38.48 |
| AT1G80840.1 | Thale cress | nucleus | 42.18 | 38.41 |
| Bra003588.1-P | Field mustard | nucleus | 41.45 | 38.38 |
| CDX67971 | Canola | nucleus | 41.45 | 38.38 |
| KRH44560 | Soybean | nucleus | 43.64 | 38.34 |
| CDX87347 | Canola | nucleus | 41.45 | 38.0 |
| Bra035148.1-P | Field mustard | nucleus | 41.45 | 38.0 |
| Bra011299.1-P | Field mustard | nucleus | 43.27 | 37.54 |
| AT4G31800.1 | Thale cress | nucleus | 42.18 | 37.42 |
| CDY39879 | Canola | nucleus | 41.45 | 37.13 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 38.91 | 37.02 |
| CDX68787 | Canola | nucleus | 42.91 | 36.99 |
| KRH05350 | Soybean | nucleus | 41.82 | 36.86 |
| Bra010220.1-P | Field mustard | nucleus | 41.09 | 36.69 |
| Solyc03g116890.2.1 | Tomato | nucleus | 45.09 | 35.43 |
| PGSC0003DMT400051047 | Potato | nucleus | 44.0 | 34.08 |
| Bra023983.1-P | Field mustard | nucleus | 42.18 | 33.62 |
| CDY70096 | Canola | nucleus | 42.18 | 33.62 |
| PGSC0003DMT400073396 | Potato | nucleus | 43.64 | 33.33 |
| Solyc06g068460.2.1 | Tomato | nucleus | 43.64 | 33.33 |
| KRH52329 | Soybean | nucleus | 36.0 | 32.04 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 10.55 | 29.9 |
| GSMUA_Achr3P31130_001 | Banana | mitochondrion, nucleus | 26.91 | 21.14 |
| GSMUA_Achr3P03090_001 | Banana | nucleus | 25.82 | 18.59 |
| GSMUA_Achr11P... | Banana | nucleus | 27.64 | 18.14 |
| GSMUA_Achr7P08850_001 | Banana | nucleus | 25.45 | 18.04 |
| GSMUA_Achr10P... | Banana | nucleus | 24.0 | 17.51 |
| GSMUA_Achr1P05240_001 | Banana | nucleus | 20.0 | 16.87 |
| GSMUA_Achr7P18820_001 | Banana | nucleus | 27.27 | 16.7 |
| GSMUA_Achr6P07620_001 | Banana | nucleus, plastid | 29.45 | 16.6 |
| GSMUA_Achr3P20290_001 | Banana | nucleus | 22.55 | 16.19 |
| GSMUA_Achr2P18390_001 | Banana | nucleus | 21.45 | 16.08 |
| GSMUA_Achr7P13400_001 | Banana | nucleus | 23.27 | 15.96 |
| GSMUA_Achr10P... | Banana | nucleus | 28.36 | 15.73 |
| GSMUA_Achr6P02330_001 | Banana | nucleus | 21.09 | 15.72 |
| GSMUA_Achr5P16750_001 | Banana | nucleus | 27.64 | 15.64 |
| GSMUA_Achr10P... | Banana | nucleus | 26.55 | 15.24 |
| GSMUA_Achr6P05880_001 | Banana | nucleus | 26.18 | 15.13 |
| GSMUA_Achr2P15200_001 | Banana | nucleus | 28.73 | 14.85 |
| GSMUA_Achr6P13630_001 | Banana | nucleus | 28.0 | 14.69 |
| GSMUA_Achr10P... | Banana | nucleus | 26.55 | 14.31 |
| GSMUA_Achr5P09730_001 | Banana | nucleus | 17.45 | 6.74 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr3G13440_001 | EnsemblPlants:GSMUA_Achr3P13440_001 | EnsemblPlants:GSMUA_Achr3T13440_001 | InterPro:IPR003657 |
| InterPro:IPR036576 | UniProt:M0SEB1 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000295F951 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg |
Description
Putative WRKY transcription factor 18 [Source:GMGC_GENE;Acc:GSMUA_Achr3G13440_001]
Coordinates
chr3:-:9894023..9895201
Molecular Weight (calculated)
30357.7 Da
IEP (calculated)
7.837
GRAVY (calculated)
-0.642
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAWLDLDL NVGSLRFPVD APQVFPVEYK RVEDKISMRG GERSDAQVEG LAAELIRVTE ENKKLDETLR IITAKYTSLW NQLNDLTTTT SSSEGASPSP
101: SPAGKRKIES SAGHTEPANC NAECTSAEES CKRVRQDCKP PVWKLHVRTN PSDSSLVVKD GYQWRKYGQK VTRDNPSPRA YFRCSFAPAC PVKKKVQRSA
201: EDQSILVATY EGEHNHSQPS QVGDRSDMDF GRSSHPKSSV SEELHPTLVE QMARLLTKNP AFTAAVATAI SGMML
101: SPAGKRKIES SAGHTEPANC NAECTSAEES CKRVRQDCKP PVWKLHVRTN PSDSSLVVKD GYQWRKYGQK VTRDNPSPRA YFRCSFAPAC PVKKKVQRSA
201: EDQSILVATY EGEHNHSQPS QVGDRSDMDF GRSSHPKSSV SEELHPTLVE QMARLLTKNP AFTAAVATAI SGMML
001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT
Arabidopsis Description
WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.