Factsheet for GSMUA_Achr3P28040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P05360_001
GSMUA_Achr3P27750_001
GSMUA_Achr4P05720_001
GSMUA_Achr4P12470_001
GSMUA_Achr4P25000_001
GSMUA_Achr5P12940_001
GSMUA_Achr5P21990_001
GSMUA_Achr5P22630_001
GSMUA_Achr6P36010_001
GSMUA_Achr8P23820_001
GSMUA_Achr9P13950_001
GSMUA_Achr9P14160_001
GSMUA_Achr9P23140_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr10P...	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P05360_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr3P27750_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P05720_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P12470_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P21990_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr5P22630_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr6P36010_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr8P23820_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P14160_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr9P23140_001	AT1G27360.1	21798944
AT2G24050.1	GSMUA_Achr4P25000_001	AT5G35620.1	21798944
AT2G24050.1	GSMUA_Achr5P12940_001	AT5G35620.1	21798944
AT5G57870.1	GSMUA_Achr9P13950_001	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	6.65	73.17
GSMUA_Achr4P05990_001	Banana	cytosol	19.51	59.86
CDY69274	Canola	cytosol, mitochondrion	30.16	41.59
AT1G62410.1	Thale cress	cytosol	19.96	40.36
CDY28211	Canola	mitochondrion	40.8	38.98
Solyc07g005780.1.1	Tomato	cytosol	32.59	32.67
Bra011218.1-P	Field mustard	plastid	39.25	32.36
GSMUA_Achr9P22750_001	Banana	plastid	51.88	31.45
GSMUA_Achr11P...	Banana	cytosol	22.62	30.82
GSMUA_AchrUn_...	Banana	cytosol	50.78	30.7
HORVU2Hr1G086240.1	Barley	cytosol	48.78	29.22
Os02t0611500-01	Rice	cytosol	49.89	28.85
Zm00001d003147_P001	Maize	plastid	49.67	28.5
EES12452	Sorghum	cytosol	49.67	28.32
KRH03030	Soybean	endoplasmic reticulum	49.45	28.26
TraesCS2A01G354900.1	Wheat	cytosol	49.45	28.23
KRH72326	Soybean	endoplasmic reticulum	49.0	28.19
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	49.22	28.17
Os04t0499300-01	Rice	plastid	50.33	28.16
Zm00001d025777_P007	Maize	plastid	48.78	28.03
TraesCS2B01G373600.1	Wheat	cytosol	49.0	28.01
KRH55033	Soybean	endoplasmic reticulum	48.12	28.0
VIT_11s0037g00490.t01	Wine grape	plastid	49.22	27.96
KRH63081	Soybean	endoplasmic reticulum	47.45	27.65
CDY39236	Canola	cytosol	45.01	27.47
Solyc12g009960.1.1	Tomato	nucleus	47.01	27.43
Solyc07g005810.2.1	Tomato	plastid	47.01	27.43
PGSC0003DMT400029102	Potato	cytosol, plastid	47.23	27.31
PGSC0003DMT400020464	Potato	cytosol	46.78	27.3
Bra024051.1-P	Field mustard	cytosol	45.23	27.27
CDX68687	Canola	plastid	45.23	27.27
Bra011211.1-P	Field mustard	plastid	45.23	27.24
CDX72262	Canola	cytosol	45.01	27.21
CDY28203	Canola	cytosol	30.82	27.2
CDY02774	Canola	plastid	46.34	27.07
Bra020407.1-P	Field mustard	plastid	46.12	27.01
CDY32742	Canola	plastid	46.12	27.01
AT5G57870.1	Thale cress	plastid	45.68	26.41
AT2G24050.1	Thale cress	plastid	43.68	26.37
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	49.22	25.14
GSMUA_Achr4P12750_001	Banana	cytosol	51.44	20.0
HORVU6Hr1G023180.1	Barley	cytosol	12.2	18.64
GSMUA_Achr2P18290_001	Banana	cytosol	24.83	17.02
Os06t0520600-01	Rice	extracellular	24.39	15.47
AT4G30680.1	Thale cress	mitochondrion, plastid	7.76	13.31
GSMUA_Achr4P05970_001	Banana	cytosol	3.33	9.93
GSMUA_Achr11P...	Banana	nucleus	27.49	7.49
GSMUA_Achr11P...	Banana	nucleus	26.61	7.47
GSMUA_Achr8P14940_001	Banana	plastid	27.05	6.28
GSMUA_Achr2P18280_001	Banana	nucleus	9.53	4.2

Protein Annotations

EnsemblPlants:GSMUA_Achr3P28040_001	EnsemblPlants:GSMUA_Achr3T28040_001	EnsemblPlantsGene:GSMUA_Achr3G28040_001	Gene3D:1.25.40.180	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	InterPro:ARM-type_fold	InterPro:IPR016021	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	PFAM:PF02854	SMART:SM00543	SUPFAM:SSF48371
UniParc:UPI000296290A	UniProt:M0SIH0	MapMan:17.4.2.4.2	:	:	:

Description

Eukaryotic initiation factor iso-4F subunit p82-34 [Source:GMGC_GENE;Acc:GSMUA_Achr3G28040_001]

Coordinates

chr3:-:27435448..27440864

Molecular Weight (calculated)

51230.4 Da

IEP (calculated)

8.548

GRAVY (calculated)

-0.335

Length

451 amino acids

Sequence
(BLAST)

001: MSSKNLFVLI RQSTLFGDVK SWDTIYGNKE SSQLNSGHEK TWRLSKRGSQ FPSSYQVGTA PALHKAEVAW SARRGNLRQK EHVLKTVKCI LNKLTPEKYD
101: VLKGQIINAG ITTPDILKGV TALIFEEAVF EPTFCPVYAQ LCSNLNEKLP VLPPEEEGGR EITFKRILLN NCQEAFEGAE KLRDEVRKLN GPDHEMEHRN
201: KERIVKLRTL GNLRLIGELL KQKMVPEKIV HHIVQELLGH DGKSCAAEEN VEAICQLLKT TGKQLDESPK SQRFNDVYFN WLKELSIDPQ LPPPLRFMVH
301: DMLDLRANNW VPHHEVLVLK TVEGILNKLT PEKFDVLKGQ IVDAGIMTPD ILKLLSFLRK LSVFEPTICP VCAQLCSYLN ERLPFFPIDE EGGRVITVKR
401: VLLNNCQEAF EGVEKPRDEV RKLKGITAID MRSHLKKVSG NLSPHLNFHA T

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.