Factsheet for VIT_04s0008g06770.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_05s0049g01770.t01
VIT_11s0065g00170.t01
VIT_16s0115g00130.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	VIT_11s0065g00170.t01	AT1G27360.1	21798944
AT2G24050.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT2G24050.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT2G24050.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT2G24050.1	VIT_05s0049g01770.t01	AT5G35620.1	21798944
AT5G57870.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT5G57870.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT5G57870.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0037g00490.t01	Wine grape	plastid	68.63	76.32
GSMUA_Achr4P06000_001	Banana	cytosol	3.4	73.17
Solyc07g005810.2.1	Tomato	plastid	59.91	68.43
PGSC0003DMT400029102	Potato	cytosol, plastid	60.14	68.08
PGSC0003DMT400020464	Potato	cytosol	58.55	66.88
Solyc12g009960.1.1	Tomato	nucleus	58.21	66.49
GSMUA_Achr4P05990_001	Banana	cytosol	10.87	65.31
GSMUA_Achr9P22750_001	Banana	plastid	54.13	64.25
CDY28203	Canola	cytosol	36.13	62.43
AT5G57870.1	Thale cress	plastid	54.81	62.05
CDY32742	Canola	plastid	54.02	61.95
GSMUA_AchrUn_...	Banana	cytosol	52.32	61.93
Bra020407.1-P	Field mustard	plastid	53.91	61.82
CDY02774	Canola	plastid	53.91	61.66
Os02t0611500-01	Rice	cytosol	54.13	61.28
EES12452	Sorghum	cytosol	54.81	61.19
Zm00001d003147_P001	Maize	plastid	54.36	61.07
Bra011218.1-P	Field mustard	plastid	37.71	60.88
Zm00001d025777_P007	Maize	plastid	54.02	60.76
CDY69274	Canola	cytosol, mitochondrion	22.2	59.94
CDY28211	Canola	mitochondrion	31.94	59.75
CDY39236	Canola	cytosol	49.83	59.54
HORVU2Hr1G086240.1	Barley	cytosol	50.62	59.36
Bra024051.1-P	Field mustard	cytosol	49.94	58.96
Bra011211.1-P	Field mustard	plastid	49.94	58.88
TraesCS2A01G354900.1	Wheat	cytosol	52.66	58.86
TraesCS2B01G373600.1	Wheat	cytosol	52.55	58.81
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	52.43	58.76
CDX68687	Canola	plastid	49.72	58.69
CDX72262	Canola	cytosol	49.49	58.58
Os04t0499300-01	Rice	plastid	53.0	58.06
AT2G24050.1	Thale cress	plastid	46.32	54.75
AT4G30680.1	Thale cress	mitochondrion, plastid	15.4	51.71
GSMUA_Achr3P28040_001	Banana	cytosol	25.14	49.22
Solyc07g005780.1.1	Tomato	cytosol	24.01	47.11
GSMUA_Achr4P05970_001	Banana	cytosol	7.93	46.36
AT1G62410.1	Thale cress	cytosol	11.21	44.39
GSMUA_Achr4P12750_001	Banana	cytosol	57.87	44.05
HORVU6Hr1G023180.1	Barley	cytosol	12.8	38.31
Os06t0520600-01	Rice	extracellular	18.12	22.5
VIT_15s0021g00980.t01	Wine grape	nucleus	21.29	10.98

Protein Annotations

Gene3D:1.25.40.180	EntrezGene:100250837	wikigene:100250837	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	ProteinID:CCB46872
ProteinID:CCB46872.1	UniProt:F6H343	EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003891
InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	EntrezGene:LOC100250837	wikigene:LOC100250837	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	TIGR:TC53637	TIGR:TC65844	TMHMM:TMhelix	UniParc:UPI00015C8CA9
ArrayExpress:VIT_04s0008g06770	EnsemblPlantsGene:VIT_04s0008g06770	EnsemblPlants:VIT_04s0008g06770.t01	unigene:Vvi.6668	RefSeq:XP_002285559	RefSeq:XP_002285559.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:6768535..6777086

Molecular Weight (calculated)

97270.7 Da

IEP (calculated)

8.957

GRAVY (calculated)

-0.428

Length

883 amino acids

Sequence
(BLAST)

001: MRKKKKGKLR EQKGFSHLEG ASLSFSLRSC AERGEVYTGW ERKSREADSP FSLYSNPIPT LSLSISLCVL SLCPLSVIFF SLQLNSGFAS RVMQQADQTV
101: ISLRPGGGGG PRGTRFLASR FDSSSSSSSD AQPLRPHGGL APSSFLKSGD LRFEGRERVR YTRDQLLQLR EVVDIPENIL KIKQEIESEF GGEDQNWNRG
201: DGNVQPQSQS RYAEPDNRDW RGRSSQLPAT GEDRSWESIR DNKELPSRFE SRTQDLNNRQ DQLNSQFVRA QLSSNQGVGP APVLVKAEVP WSARRVSLSE
301: QERVLKTVKG ILNKLTPEKF DVLKGQLIES GITTHDILKG VISLIFDKAV LEPTFCPMYA LLCSDLNEKL PPFPSEEPGG KEITFKRILL NNCQEAFEGA
401: DSLRAEIGLL TAPEQEVERR EKERKVKLRT LGNIRLIGEL LKQKMVPEKI VHHILQELLG HDGKTCPAEE NVEAICQFFN TIGKQLDESQ KSRRVNDLYF
501: SRLKELTTNP QLAPRLRFMV RNVLDLRANN WVPRREEVTA KTITEIHSEA EKNLGLRPGA TASMRNGRNT GALGGMGPGG FPISRPGSGG MMPGMPGTRK
601: MPGMPGLDTD NWEVPRNRSM PRADGVGAQS ALRVQSALIS KPGPINSKLL PQGSGGFISG KTSALLQGSS ASTSQQPSSF VLGVEPISQT PKPVSQAAPV
701: RTPEKPQAAA PRSNPVDLRR KTVSLLEEYF SVRILDEALQ CVEELKSPAY HPEVVKEAVS LALEKSPPCV EPVIKLLVYL FNKNVLLARD LGTGCLLYGS
801: LLDDVGIDLP KAPNNFGEVL GKLVLAGGLD FKVVKEVLEK VEDDRFQAAI FDAVMSGISS DPLGQGLMEK HRLDIQDCKS LLG

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.