Factsheet for PGSC0003DMT400020464

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	PGSC0003DMT400044186	AT5G35620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009960.1.1	Tomato	nucleus	96.12	96.12
PGSC0003DMT400029102	Potato	cytosol, plastid	80.85	80.13
VIT_11s0037g00490.t01	Wine grape	plastid	72.32	70.4
GSMUA_Achr4P06000_001	Banana	cytosol	3.62	68.29
KRH72326	Soybean	endoplasmic reticulum	66.62	65.69
KRH55033	Soybean	endoplasmic reticulum	65.85	65.68
KRH63081	Soybean	endoplasmic reticulum	65.72	65.63
KRH03030	Soybean	endoplasmic reticulum	66.49	65.15
CDY69274	Canola	cytosol, mitochondrion	27.17	64.22
CDY32742	Canola	plastid	60.41	60.65
Bra020407.1-P	Field mustard	plastid	60.28	60.52
AT5G57870.1	Thale cress	plastid	60.8	60.26
CDY28203	Canola	cytosol	39.72	60.08
CDY28211	Canola	mitochondrion	36.48	59.75
CDY02774	Canola	plastid	59.51	59.59
GSMUA_Achr4P05990_001	Banana	cytosol	11.25	59.18
GSMUA_Achr9P22750_001	Banana	plastid	56.92	59.14
Bra011218.1-P	Field mustard	plastid	41.53	58.68
EES12452	Sorghum	cytosol	60.03	58.66
CDY39236	Canola	cytosol	56.02	58.59
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	66.88	58.55
GSMUA_AchrUn_...	Banana	cytosol	56.4	58.45
Zm00001d003147_P001	Maize	plastid	59.38	58.4
Bra024051.1-P	Field mustard	cytosol	56.4	58.29
Zm00001d025777_P007	Maize	plastid	59.12	58.22
Bra011211.1-P	Field mustard	plastid	56.14	57.94
CDX68687	Canola	plastid	56.02	57.89
HORVU2Hr1G086240.1	Barley	cytosol	56.27	57.77
CDX72262	Canola	cytosol	55.63	57.64
Os02t0611500-01	Rice	cytosol	57.83	57.31
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	57.96	56.85
TraesCS2A01G354900.1	Wheat	cytosol	58.09	56.84
TraesCS2B01G373600.1	Wheat	cytosol	57.83	56.65
Os04t0499300-01	Rice	plastid	57.96	55.58
AT2G24050.1	Thale cress	plastid	53.04	54.89
AT4G30680.1	Thale cress	mitochondrion, plastid	16.17	47.53
GSMUA_Achr3P28040_001	Banana	cytosol	27.3	46.78
AT1G62410.1	Thale cress	cytosol	13.32	46.19
GSMUA_Achr4P12750_001	Banana	cytosol	61.32	40.86
GSMUA_Achr4P05970_001	Banana	cytosol	7.5	38.41
HORVU6Hr1G023180.1	Barley	cytosol	13.71	35.93
Os06t0520600-01	Rice	extracellular	20.18	21.94
PGSC0003DMT400004663	Potato	nucleus	22.38	20.89
PGSC0003DMT400004341	Potato	nucleus	24.19	10.35

Protein Annotations

Gene3D:1.25.40.180	EntrezGene:102597962	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI
UniProt:M1ADI9	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	EnsemblPlantsGene:PGSC0003DMG400007907
PGSC:PGSC0003DMG400007907	EnsemblPlants:PGSC0003DMT400020464	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI00029664F1	RefSeq:XP_006350109.1	SEG:seg	:

Description

Eukaryotic translation initiation factor 4F / eIF-4F, putative [Source:PGSC_GENE;Acc:PGSC0003DMG400007907]

Coordinates

chr12:-:2380034..2388277

Molecular Weight (calculated)

85379.3 Da

IEP (calculated)

8.189

GRAVY (calculated)

-0.466

Length

773 amino acids

Sequence
(BLAST)

001: MQADQTVISL RPGGGNRGGG SRVFGSRFDT SSTNSDLSVF RTHGGSSSLP SFKTGDSRFE SHERVRYTRD QLLQLREAVV LQLPEVFLQI KQEIEAELFG
101: EDASRGRVDN NVQVQSQGRY SEPDNRDWRN RPAQFSAPIE ERSWEALREN REFGGQYTRQ EQSQFARAQV SANQGGGPAP TLIKAEVPWS VQRGTLSDKA
201: RVLKTVKGIL NKLTPEKFDL LKGQLIDSGI TSADILKGVI SLIFDKAVLE PTFCPMYAQL CSDLNEKLPP FPSDEPGGKE ITFKRVLLNN CQEAFEGADK
301: LREEARQMTA PEQESERKDK ERLIKLRTLG NIRLIGELLK QNMVPEKIVH HIVQELLGQD PKSCPEEENV EAICQFFNTI GKQLDKKQKS RHINDMYFNR
401: LKELSTNPQL VARLKFLVRD VLDLRANNWV PRREEVKAKT INEIHSEAEK TLGLRPGATL SIRNARAPPG AQGNLGPGGY PINRPGTGGM MPGMPGARKM
501: PGMPGMDNDI WEVPRSRMPR GAQQPLIGKS PSLNTRLLPQ GSNVSMSGRS SALLQGSGGP PVRPSGYVSG MEPVSQVPVP VKLSPTSTVL PVAEKPQVPA
601: ARSNPEELKR KTVSLLEEYF SVRILDEALQ CIEELKSPAF YPEVVEKAIS LGLDKSPPRV EPVAQLLEHL FAKKVFTASD LATGCLNFAS QLEDLAMDLP
701: KAPANFGEII SKLVLTGAMD FKLVNEILQK VTDDLYEKDL FAAIMKAISS SPTGQGVLDS QAPDVEACKN LFQ

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.