Factsheet for PGSC0003DMT400029102

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044186

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	PGSC0003DMT400044186	AT5G35620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005810.2.1	Tomato	plastid	96.03	96.9
PGSC0003DMT400020464	Potato	cytosol	80.13	80.85
VIT_11s0037g00490.t01	Wine grape	plastid	71.92	70.65
KRH63081	Soybean	endoplasmic reticulum	67.82	68.35
GSMUA_Achr4P06000_001	Banana	cytosol	3.59	68.29
KRH55033	Soybean	endoplasmic reticulum	67.56	68.0
KRH03030	Soybean	endoplasmic reticulum	68.59	67.81
KRH72326	Soybean	endoplasmic reticulum	68.08	67.73
AT5G57870.1	Thale cress	plastid	62.95	62.95
CDY32742	Canola	plastid	61.41	62.21
CDY69274	Canola	cytosol, mitochondrion	26.03	62.08
Bra020407.1-P	Field mustard	plastid	61.28	62.08
GSMUA_Achr4P05990_001	Banana	cytosol	11.67	61.9
CDY28203	Canola	cytosol	40.38	61.64
CDY02774	Canola	plastid	60.51	61.14
Bra011218.1-P	Field mustard	plastid	42.18	60.15
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	68.08	60.14
GSMUA_Achr9P22750_001	Banana	plastid	57.18	59.95
CDY28211	Canola	mitochondrion	35.9	59.32
EES12452	Sorghum	cytosol	59.87	59.04
CDX68687	Canola	plastid	56.54	58.96
Zm00001d003147_P001	Maize	plastid	59.23	58.78
GSMUA_AchrUn_...	Banana	cytosol	56.15	58.71
Bra011211.1-P	Field mustard	plastid	56.15	58.48
CDY39236	Canola	cytosol	55.38	58.46
Os02t0611500-01	Rice	cytosol	58.33	58.33
Bra024051.1-P	Field mustard	cytosol	55.77	58.16
Zm00001d025777_P007	Maize	plastid	58.46	58.09
CDX72262	Canola	cytosol	55.51	58.04
HORVU2Hr1G086240.1	Barley	cytosol	55.9	57.9
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	57.56	56.98
TraesCS2B01G373600.1	Wheat	cytosol	57.56	56.91
TraesCS2A01G354900.1	Wheat	cytosol	57.56	56.84
Os04t0499300-01	Rice	plastid	57.95	56.08
AT2G24050.1	Thale cress	plastid	53.08	55.42
AT4G30680.1	Thale cress	mitochondrion, plastid	16.79	49.81
GSMUA_Achr3P28040_001	Banana	cytosol	27.31	47.23
AT1G62410.1	Thale cress	cytosol	13.21	46.19
GSMUA_Achr4P12750_001	Banana	cytosol	62.44	41.98
GSMUA_Achr4P05970_001	Banana	cytosol	7.69	39.74
HORVU6Hr1G023180.1	Barley	cytosol	13.59	35.93
Os06t0520600-01	Rice	extracellular	20.38	22.36
PGSC0003DMT400004663	Potato	nucleus	22.56	21.26
PGSC0003DMT400004341	Potato	nucleus	24.23	10.46

Protein Annotations

Gene3D:1.25.40.180	EntrezGene:102579712	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI
UniProt:M1AS85	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	EnsemblPlantsGene:PGSC0003DMG400011196
PGSC:PGSC0003DMG400011196	EnsemblPlants:PGSC0003DMT400029102	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0002961618	RefSeq:XP_006343625.1	SEG:seg	:

Description

Eukaryotic translation initiation factor 4F / eIF-4F, putative [Source:PGSC_GENE;Acc:PGSC0003DMG400011196]

Coordinates

chr7:-:1080856..1086641

Molecular Weight (calculated)

85268.8 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.471

Length

780 amino acids

Sequence
(BLAST)

001: MQADQTVLSL RPGGGNRGGG SRVLGPRFEP SSTNSDLPLL RPHGGSSSIS SFKTGDSRFE GRECVRYTRD QLLQLREVVA ISDDILRIKQ EVESELFGED
101: GSRSRADTNV QVQSQTRYSE PDSRDWRSKS SQFSAPAEDR SWDTLRENRE FGGRQEQLNS QFARTQISPN RGGGPAPTLV KAELPWSVRR GNLSDEARVL
201: KTVKGILNKL TPEKFDLLKG QLIDSGITSA DILKGVISLI FDKAVLEPTF CPMYAQLCSD LNEKLPPFPS DEPGGKEITF KRILLNNCQE AFEGAHKLRE
301: EARQMTAPDQ ESERKDKERL IKLRTLGNIK LIGELLKQKM VPEKIVHHIV QELLGQDPTS CPEEENVEAI CQFFNTIGKQ LDENQKSRRI NDVYFNRLKE
401: LSTNPQLAPR LRFMVRNVLD LRSNSWVPRR EEVKAKTITE IHSEAEKTLG LRPGATASMR NSRGPPAQGS LSPGGFPINR PGTGGMMPGM PGNRKMPGTP
501: GMDNDNWEVP RSRSMPRGNG PLVQAGGRSQ PPLVGKSPAL NPKLLPQGSG GYVSGRPSAL LQGSGAPPAH PTGYGIGMNP ASQVPGPVRP PSTIVVSPVV
601: AKPQAPAASS TPDVLKRKTA SLLEEYFSVR LLEEALQCVE ELKSPAYHSE VVKEAISIGL DKSPPCVEPV AQLLEHLFAK KVFTAGDLVT GFLNFSSLLD
701: DLAMDLPKAP VNFGDIISRL VLAGAFDFKV VNEILKKVTD DLYQKDVFTA TMGSISSSPT GQAVLDSQAS DVEACKALFQ

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.