CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011218.1-P	Field mustard	plastid	70.65	66.0
Bra011211.1-P	Field mustard	plastid	89.82	61.28
CDX68687	Canola	plastid	87.67	59.89
GSMUA_Achr4P05990_001	Banana	cytosol	17.03	59.18
AT4G30680.1	Thale cress	mitochondrion, plastid	29.35	57.03
CDY39236	Canola	cytosol	78.67	54.4
CDX72262	Canola	cytosol	77.1	52.81
CDY28211	Canola	mitochondrion	40.51	43.86
VIT_11s0037g00490.t01	Wine grape	plastid	65.17	41.94
Solyc07g005810.2.1	Tomato	plastid	61.84	40.88
KRH72326	Soybean	endoplasmic reticulum	62.23	40.56
KRH03030	Soybean	endoplasmic reticulum	62.43	40.43
PGSC0003DMT400029102	Potato	cytosol, plastid	61.64	40.38
CDY02774	Canola	plastid	60.67	40.16
CDY32742	Canola	plastid	60.47	40.13
KRH63081	Soybean	endoplasmic reticulum	60.47	39.92
PGSC0003DMT400020464	Potato	cytosol	60.08	39.72
KRH55033	Soybean	endoplasmic reticulum	60.08	39.61
Solyc12g009960.1.1	Tomato	nucleus	58.9	38.94
GSMUA_Achr4P05970_001	Banana	cytosol	11.35	38.41
HORVU2Hr1G086240.1	Barley	cytosol	55.97	37.98
Zm00001d025777_P007	Maize	plastid	56.95	37.07
GSMUA_Achr9P22750_001	Banana	plastid	53.03	36.42
Zm00001d003147_P001	Maize	plastid	55.77	36.26
EES12452	Sorghum	cytosol	55.97	36.16
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	62.43	36.13
Os02t0611500-01	Rice	cytosol	54.99	36.03
TraesCS2B01G373600.1	Wheat	cytosol	55.38	35.87
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	55.19	35.79
TraesCS2A01G354900.1	Wheat	cytosol	55.19	35.7
GSMUA_AchrUn_...	Banana	cytosol	52.05	35.66
Os04t0499300-01	Rice	plastid	54.4	34.49
HORVU6Hr1G023180.1	Barley	cytosol	19.77	34.24
GSMUA_Achr3P28040_001	Banana	cytosol	27.2	30.82
CDY69274	Canola	cytosol, mitochondrion	19.57	30.58
GSMUA_Achr4P12750_001	Banana	cytosol	57.53	25.34
Solyc07g005780.1.1	Tomato	cytosol	18.98	21.56
CDX89056	Canola	cytosol	23.29	20.27
CDX98293	Canola	cytosol	18.4	13.17
Os06t0520600-01	Rice	extracellular	13.11	9.42
CDY42674	Canola	plastid	26.42	8.5
CDX89055	Canola	nucleus	9.0	5.07
GSMUA_Achr4P06000_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	GO:A0A078GU71	UniProt:A0A078GU71	InterPro:ARM-type_fold	EnsemblPlants:CDY28203
ProteinID:CDY28203	ProteinID:CDY28203.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00039926001	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0004EE7796	SEG:seg	:

Description

BnaA01g06460DBnaA01g06460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU71]

Coordinates

chrLK032216:-:253089..255071

Molecular Weight (calculated)

56050.3 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.295

Length

511 amino acids

Sequence
(BLAST)

001: MYALLCFDIN GKLPSFPSEE AGGKEITFKR VLLNNCQEQF EGADKLKEEV RLMTDPAQEM ERKDKERMAK LRTLGNIRLI GELLKQKMVP EKILHHIVQE
101: LLGTDNKVCP AEEEVEALCQ VFITIGKQLD ESLRSRSIND MYFTRLKELA VHPMLEPRLR FMVRNVVDLR ADKWIPRREE MKAKKITEIH SEAEKTLGLR
201: PGAMANMRNN NNRGGADADI LGSGNFLGRS GTGGMMPGMP GARKMPGMPV TDDDGWEMAR SRSMPRGNRQ NPQPAGRVQS PAIINKSLSV NSRLLPQGSG
301: GILNGKPSAL LQGNSGEPAK AVIAPSKPAV EKPQPQVAAP PMAATSLNSE VLSRKTKSLL EEYFNVRLLD EALQCVEELK SPSYHPELVK EAISLGLEKN
401: PPCVTPVANL LAHLVSKNVL TPKDIGSGCL LYGSMLDDIG IDLPKAPNNF GEILGSLVMA SASGFEVVKD ILMKMEDEWF KKAVLDAVIK SVSDSLLATH
501: AADVEACRSL V

Best Arabidopsis Sequence Match ( AT4G30680.1 )
(BLAST)

001: MQQGDSMLSL RPGGGRGGSR RFAPRFTLSS SSDLTNGGDA PSFAVKGSGG LLNDRPSALV QGNGSQQPKP VPSPTRQTVE KPKPQPQPQE VAPPTTTSLN
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV

Arabidopsis Description

Initiation factor eIF-4 gamma, MA3 [Source:UniProtKB/TrEMBL;Acc:Q9SUH8]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.