Factsheet for Solyc07g005810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc05g052510.2.1
Solyc06g051310.2.1
Solyc07g040750.1.1
Solyc09g090580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc09g090580.2.1	AT5G35620.1	21798944
AT5G57870.1	Solyc07g040750.1.1	AT1G72730.1	21798944
AT5G57870.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc06g051310.2.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029102	Potato	cytosol, plastid	96.9	96.03
Solyc12g009960.1.1	Tomato	nucleus	80.34	80.34
VIT_11s0037g00490.t01	Wine grape	plastid	73.09	71.16
KRH63081	Soybean	endoplasmic reticulum	68.82	68.73
KRH03030	Soybean	endoplasmic reticulum	69.99	68.57
KRH55033	Soybean	endoplasmic reticulum	68.69	68.52
GSMUA_Achr4P06000_001	Banana	cytosol	3.62	68.29
KRH72326	Soybean	endoplasmic reticulum	68.95	67.98
AT5G57870.1	Thale cress	plastid	64.04	63.46
CDY32742	Canola	plastid	62.48	62.73
Bra020407.1-P	Field mustard	plastid	62.35	62.6
GSMUA_Achr4P05990_001	Banana	cytosol	11.9	62.59
CDY69274	Canola	cytosol, mitochondrion	26.39	62.39
CDY28203	Canola	cytosol	40.88	61.84
CDY02774	Canola	plastid	61.45	61.53
Bra011218.1-P	Field mustard	plastid	42.95	60.69
CDY28211	Canola	mitochondrion	36.74	60.17
GSMUA_Achr9P22750_001	Banana	plastid	57.7	59.95
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	68.43	59.91
EES12452	Sorghum	cytosol	60.8	59.42
CDX68687	Canola	plastid	57.44	59.36
Zm00001d003147_P001	Maize	plastid	60.16	59.16
Bra011211.1-P	Field mustard	plastid	57.05	58.88
CDY39236	Canola	cytosol	56.14	58.73
GSMUA_AchrUn_...	Banana	cytosol	56.66	58.71
Bra024051.1-P	Field mustard	cytosol	56.53	58.42
Zm00001d025777_P007	Maize	plastid	59.25	58.34
HORVU2Hr1G086240.1	Barley	cytosol	56.79	58.3
CDX72262	Canola	cytosol	56.14	58.18
Os02t0611500-01	Rice	cytosol	58.6	58.08
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	58.47	57.36
TraesCS2B01G373600.1	Wheat	cytosol	58.47	57.29
TraesCS2A01G354900.1	Wheat	cytosol	58.47	57.22
AT2G24050.1	Thale cress	plastid	54.33	56.22
Os04t0499300-01	Rice	plastid	58.6	56.2
Solyc07g005780.1.1	Tomato	cytosol	30.4	52.22
AT4G30680.1	Thale cress	mitochondrion, plastid	16.95	49.81
GSMUA_Achr3P28040_001	Banana	cytosol	27.43	47.01
AT1G62410.1	Thale cress	cytosol	13.32	46.19
GSMUA_Achr4P12750_001	Banana	cytosol	63.26	42.16
GSMUA_Achr4P05970_001	Banana	cytosol	8.02	41.06
HORVU6Hr1G023180.1	Barley	cytosol	13.97	36.61
Os06t0520600-01	Rice	extracellular	20.7	22.5
Solyc08g077700.2.1	Tomato	nucleus	24.84	11.65
Solyc01g088700.2.1	Tomato	nucleus	24.45	10.47

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR003891
InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:K4CB52	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847
PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544
SUPFAM:SSF48371	EnsemblPlantsGene:Solyc07g005810.2	EnsemblPlants:Solyc07g005810.2.1	UniParc:UPI000276C1A1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:648580..654196

Molecular Weight (calculated)

84927.7 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.471

Length

773 amino acids

Sequence
(BLAST)

001: MQADQTVLSL RPGGGNRGGG SRVLGPRFEP SSTNSDLPLL RPHGGSSSIS SFKTGDSRFE GRERVRYTRD QLLQLREVVA ISDDILLIKQ EVESELFGED
101: GSRSRADTNV QSQTRYSEPD SRDWRSKSSQ FSAPTEDRSW DALRENREFG GRQEQLNSQF ARTQISPNLG GGPAPTLVKA ELPWSVRRGN LSDVDRVLKT
201: VKGILNKLTP EKFDLLKGQL IDSGITSADI LKGVISLIFD KAVLEPTFCP MYAQLCSDLN EKLPPFPSDE PGGKEITFKR ILLNNCQEAF EGAHKLREEA
301: RQMTAPDQES ERKDKERLIK LRTLGNIKLI GELLKQKMVP EKIVHHIVQE LLGQDPKICP EEENVEAICQ FFNTIGKQLD ENQKSRRIND MYFNRLKELS
401: TNPQLAPRLR FMVRNVLDLR SNSWVPRREE VKAKTITEIH SEAEKTLGLR PGATASMRNS RGPPAQGSLS PGGFPINRPG TGGMMPGMPG TRKMPGTPGM
501: DNDNWEVPRS RSMPRGNGPL VQAGGRSQPP LVGKSPALNP RLLPQGSGGY VSGRPSALLQ GSGAPPARPT GYGFGMDPAA QVRPPTTVVS PVVAKPQAPA
601: ASLTPDVLKR KTASLLEEYF SVRLLEEALQ CVEELKSPAY HPEVVKEAIS IGLDKSPPRV EPVAQLLEHL FVKKVFTARD LVTGFLNFSS LLDDLAMDLP
701: KAPVNFGDII ARLVLAGAFD FKVVNEILKK VTDDLYQKDV FTATMGSISS SPTGQAVLDS QSSDVEACKA LFQ

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.