Factsheet for Os06t0520600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 25047395
extracellular: 28232208

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0139400-01
Os02t0174100-02
Os02t0221300-01
Os06t0663500-00
Os06t0703500-02
Os10t0467600-01
Os11t0104866-00
Os11t0104900-00
Os12t0104766-00
Os12t0104800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Os02t0139400-01	AT1G27360.1	21798944
AT2G24050.1	Os02t0174100-02	AT1G27360.1	21798944
AT2G24050.1	Os06t0663500-00	AT1G27360.1	21798944
AT2G24050.1	Os06t0703500-02	AT1G27360.1	21798944
AT2G24050.1	Os11t0104866-00	AT3G08530.1	21798944
AT2G24050.1	Os11t0104900-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104766-00	AT3G08530.1	21798944
AT2G24050.1	Os12t0104800-01	AT3G08530.1	21798944
AT2G24050.1	Os10t0467600-01	AT5G35620.1	21798944
AT5G57870.1	Os02t0221300-01	AT1G72730.1	21798944
AT5G57870.1	Os11t0104866-00	AT3G08530.1	21798944
AT5G57870.1	Os11t0104900-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104766-00	AT3G08530.1	21798944
AT5G57870.1	Os12t0104800-01	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P06000_001	Banana	cytosol	3.09	53.66
CDY69274	Canola	cytosol, mitochondrion	17.3	37.61
CDY28211	Canola	mitochondrion	18.85	28.39
GSMUA_Achr3P28040_001	Banana	cytosol	15.47	24.39
AT1G62410.1	Thale cress	cytosol	7.59	24.22
Solyc07g005780.1.1	Tomato	cytosol	15.19	24.0
Os02t0611500-01	Rice	cytosol	25.32	23.08
GSMUA_Achr4P05990_001	Banana	cytosol	4.64	22.45
Os04t0499300-01	Rice	plastid	24.89	21.96
KRH55033	Soybean	endoplasmic reticulum	23.21	21.29
GSMUA_AchrUn_...	Banana	cytosol	22.22	21.18
KRH63081	Soybean	endoplasmic reticulum	22.78	20.93
Solyc07g005810.2.1	Tomato	plastid	22.5	20.7
KRH03030	Soybean	endoplasmic reticulum	22.78	20.53
Bra011218.1-P	Field mustard	plastid	15.75	20.48
PGSC0003DMT400029102	Potato	cytosol, plastid	22.36	20.38
KRH72326	Soybean	endoplasmic reticulum	22.36	20.28
PGSC0003DMT400020464	Potato	cytosol	21.94	20.18
GSMUA_Achr9P22750_001	Banana	plastid	21.1	20.16
Solyc12g009960.1.1	Tomato	nucleus	21.8	20.05
VIT_11s0037g00490.t01	Wine grape	plastid	21.94	19.65
AT5G57870.1	Thale cress	plastid	21.52	19.62
Bra011211.1-P	Field mustard	plastid	20.53	19.49
CDX68687	Canola	plastid	20.11	19.12
CDY32742	Canola	plastid	20.68	19.09
Bra020407.1-P	Field mustard	plastid	20.68	19.09
CDY39236	Canola	cytosol	19.83	19.08
CDX72262	Canola	cytosol	19.97	19.03
Bra024051.1-P	Field mustard	cytosol	19.97	18.98
AT2G24050.1	Thale cress	plastid	19.55	18.61
CDY02774	Canola	plastid	19.97	18.39
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	22.5	18.12
GSMUA_Achr4P12750_001	Banana	cytosol	22.5	13.79
CDY28203	Canola	cytosol	9.42	13.11
Os06t0519400-01	Rice	nucleus	3.8	9.68
GSMUA_Achr4P05970_001	Banana	cytosol	1.69	7.95
AT4G30680.1	Thale cress	mitochondrion, plastid	2.81	7.6
Os07t0555200-01	Rice	nucleus, plastid	7.03	3.86

Protein Annotations

Gene3D:1.25.40.180	MapMan:15.5.16	Gene3D:2.30.30.1190	EntrezGene:4341164	EMBL:AK101510	InterPro:ARM-type_fold
ProteinID:BAD62014.1	ProteinID:BAF19656.1	ProteinID:BAS98003.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR016021	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	EnsemblPlantsGene:Os06g0520600	EnsemblPlants:Os06t0520600-01	PFAM:PF00642
PFAM:PF02854	PFscan:PS50103	PANTHER:PTHR23253	PANTHER:PTHR23253:SF48	UniProt:Q5Z5Q3	SMART:SM00356
SMART:SM00543	SUPFAM:SSF48371	SUPFAM:SSF90229	UniParc:UPI0000450710	RefSeq:XP_015641849.1	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 43Similar to Zinc finger CCCH type domain containing protein ZFN-like 1. (Os06t0520600-01)

Coordinates

chr6:+:19101558..19107176

Molecular Weight (calculated)

80912.0 Da

IEP (calculated)

6.383

GRAVY (calculated)

-0.606

Length

711 amino acids

Sequence
(BLAST)

001: MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV
101: KFGSCKFGMN CRFNHPPRMP VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF DHPDPGSDHE KWVVSSNANQ
201: VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQRISY TRDQLLQLCQ NVEVPKDILK FCQDINVELN GEDKISGFGA EKDHVQTPSY KRFDATDSRD
301: WHSWSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQW LKFIKCTPCK STLIKAEVPL SIQRGIISGK DEVLKTLKSI LNTFSPKMFD
401: LQKGQLIETR ISSADILKDV INLIFEKVVA EPAFCSTYAQ LCTYLNQNLT PFPPEDCDCE EITFKQALSN KCQEIFESAH TVCSEIGKLI GQDREMEQRD
501: KERVVKLETL GNINFIRALL KKKLITNKII DHIVQAVMDC CKFRFEPLGK VDLLNIIFEG MLDSDSAGDE SNICVNAMIG GNKSSIASND VEMTRKNVNR
601: QNEEAILQKS YDEVPNNKMD PQKNYADGAI SYLIEKEKPT NLESSVRICR GGCSISEIME LVVDAGAVEG SDEHFMATLL FIKPEYREIF LTLDTREGRL
701: GWLKRMYKVK E

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.