Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05970_001 | Banana | cytosol | 22.43 | 39.07 |
| Bra011218.1-P | Field mustard | plastid | 63.88 | 30.71 |
| CDY28203 | Canola | cytosol | 57.03 | 29.35 |
| HORVU6Hr1G023180.1 | Barley | cytosol | 31.94 | 28.47 |
| CDX68687 | Canola | plastid | 66.16 | 23.26 |
| Bra011211.1-P | Field mustard | plastid | 64.64 | 22.7 |
| CDY39236 | Canola | cytosol | 62.36 | 22.19 |
| Bra024051.1-P | Field mustard | cytosol | 62.36 | 21.93 |
| CDX72262 | Canola | cytosol | 60.46 | 21.31 |
| AT2G24050.1 | Thale cress | plastid | 58.56 | 20.62 |
| AT5G57870.1 | Thale cress | plastid | 54.75 | 18.46 |
| VIT_11s0037g00490.t01 | Wine grape | plastid | 53.61 | 17.76 |
| KRH72326 | Soybean | endoplasmic reticulum | 52.47 | 17.6 |
| KRH03030 | Soybean | endoplasmic reticulum | 52.09 | 17.36 |
| KRH63081 | Soybean | endoplasmic reticulum | 50.57 | 17.18 |
| KRH55033 | Soybean | endoplasmic reticulum | 50.19 | 17.03 |
| Solyc07g005810.2.1 | Tomato | plastid | 49.81 | 16.95 |
| PGSC0003DMT400029102 | Potato | cytosol, plastid | 49.81 | 16.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 46.39 | 16.35 |
| PGSC0003DMT400020464 | Potato | cytosol | 47.53 | 16.17 |
| GSMUA_Achr9P22750_001 | Banana | plastid | 45.63 | 16.13 |
| Solyc12g009960.1.1 | Tomato | nucleus | 46.77 | 15.91 |
| VIT_04s0008g06770.t01 | Wine grape | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 51.71 | 15.4 |
| TraesCS2B01G373600.1 | Wheat | cytosol | 43.35 | 14.45 |
| EES12452 | Sorghum | cytosol | 43.35 | 14.41 |
| Zm00001d025777_P007 | Maize | plastid | 42.97 | 14.39 |
| TraesCS2A01G354900.1 | Wheat | cytosol | 42.97 | 14.3 |
| TraesCS2D01G353600.1 | Wheat | cytosol, golgi, nucleus | 42.59 | 14.21 |
| Zm00001d003147_P001 | Maize | plastid | 42.21 | 14.12 |
| HORVU2Hr1G086240.1 | Barley | cytosol | 40.3 | 14.08 |
| Os02t0611500-01 | Rice | cytosol | 41.06 | 13.85 |
| Os04t0499300-01 | Rice | plastid | 38.78 | 12.66 |
| GSMUA_Achr4P05990_001 | Banana | cytosol | 6.84 | 12.24 |
| GSMUA_Achr4P12750_001 | Banana | cytosol | 44.87 | 10.17 |
| GSMUA_Achr3P28040_001 | Banana | cytosol | 13.31 | 7.76 |
| CDY28211 | Canola | mitochondrion | 12.93 | 7.2 |
| CDY69274 | Canola | cytosol, mitochondrion | 8.75 | 7.03 |
| AT1G62410.1 | Thale cress | cytosol | 4.56 | 5.38 |
| GSMUA_Achr4P06000_001 | Banana | cytosol | 0.76 | 4.88 |
| Solyc07g005780.1.1 | Tomato | cytosol | 6.84 | 4.0 |
| AT3G60240.4 | Thale cress | cytosol | 21.29 | 3.24 |
| Os06t0520600-01 | Rice | extracellular | 7.6 | 2.81 |
Protein Annotations
| Gene3D:1.25.40.180 | MapMan:35.1 | EntrezGene:829191 | ProteinID:AEE85795.1 | InterPro:ARM-type_fold | ArrayExpress:AT4G30680 |
| EnsemblPlantsGene:AT4G30680 | RefSeq:AT4G30680 | TAIR:AT4G30680 | RefSeq:AT4G30680-TAIR-G | EnsemblPlants:AT4G30680.1 | TAIR:AT4G30680.1 |
| ProteinID:CAB52441.1 | ProteinID:CAB79786.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR003891 | InterPro:IPR016021 | InterPro:Initiation_fac_eIF4g_MI |
| InterPro:MIF4-like_sf | RefSeq:NP_194797.1 | PFAM:PF02847 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PFscan:PS51366 |
| PANTHER:PTHR23253 | PANTHER:PTHR23253:SF32 | UniProt:Q9SUH8 | SMART:SM00544 | SUPFAM:SSF48371 | UniParc:UPI00000A2C7B |
| SEG:seg | : | : | : | : | : |
Description
Initiation factor eIF-4 gamma, MA3 [Source:UniProtKB/TrEMBL;Acc:Q9SUH8]
Coordinates
chr4:-:14958687..14960321
Molecular Weight (calculated)
28394.2 Da
IEP (calculated)
5.215
GRAVY (calculated)
-0.312
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQGDSMLSL RPGGGRGGSR RFAPRFTLSS SSDLTNGGDA PSFAVKGSGG LLNDRPSALV QGNGSQQPKP VPSPTRQTVE KPKPQPQPQE VAPPTTTSLN
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.