Factsheet for Solyc12g009960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc05g052510.2.1
Solyc06g051310.2.1
Solyc07g040750.1.1
Solyc09g090580.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT2G24050.1	Solyc09g090580.2.1	AT5G35620.1	21798944
AT5G57870.1	Solyc07g040750.1.1	AT1G72730.1	21798944
AT5G57870.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT5G57870.1	Solyc06g051310.2.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020464	Potato	cytosol	96.12	96.12
Solyc07g005810.2.1	Tomato	plastid	80.34	80.34
VIT_11s0037g00490.t01	Wine grape	plastid	71.8	69.9
GSMUA_Achr4P06000_001	Banana	cytosol	3.49	65.85
KRH55033	Soybean	endoplasmic reticulum	65.72	65.55
KRH63081	Soybean	endoplasmic reticulum	65.59	65.5
KRH72326	Soybean	endoplasmic reticulum	65.85	64.92
KRH03030	Soybean	endoplasmic reticulum	65.59	64.26
CDY69274	Canola	cytosol, mitochondrion	26.65	63.0
CDY32742	Canola	plastid	60.54	60.78
Bra020407.1-P	Field mustard	plastid	60.41	60.65
AT5G57870.1	Thale cress	plastid	61.06	60.51
GSMUA_Achr4P05990_001	Banana	cytosol	11.38	59.86
CDY02774	Canola	plastid	59.64	59.72
EES12452	Sorghum	cytosol	60.28	58.91
CDY28203	Canola	cytosol	38.94	58.9
Zm00001d003147_P001	Maize	plastid	59.77	58.78
CDY28211	Canola	mitochondrion	35.83	58.69
Zm00001d025777_P007	Maize	plastid	59.38	58.47
GSMUA_Achr9P22750_001	Banana	plastid	56.27	58.47
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	66.49	58.21
CDY39236	Canola	cytosol	55.37	57.92
GSMUA_AchrUn_...	Banana	cytosol	55.76	57.77
HORVU2Hr1G086240.1	Barley	cytosol	56.14	57.64
Bra024051.1-P	Field mustard	cytosol	55.76	57.62
Bra011218.1-P	Field mustard	plastid	40.75	57.59
CDX72262	Canola	cytosol	55.24	57.24
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	58.21	57.11
TraesCS2A01G354900.1	Wheat	cytosol	58.34	57.09
CDX68687	Canola	plastid	55.24	57.09
Bra011211.1-P	Field mustard	plastid	55.24	57.01
Os02t0611500-01	Rice	cytosol	57.44	56.92
TraesCS2B01G373600.1	Wheat	cytosol	58.09	56.91
Os04t0499300-01	Rice	plastid	58.34	55.96
AT2G24050.1	Thale cress	plastid	52.52	54.35
Solyc07g005780.1.1	Tomato	cytosol	29.5	50.67
GSMUA_Achr3P28040_001	Banana	cytosol	27.43	47.01
AT4G30680.1	Thale cress	mitochondrion, plastid	15.91	46.77
AT1G62410.1	Thale cress	cytosol	13.32	46.19
GSMUA_Achr4P12750_001	Banana	cytosol	61.19	40.78
GSMUA_Achr4P05970_001	Banana	cytosol	7.37	37.75
HORVU6Hr1G023180.1	Barley	cytosol	13.45	35.25
Os06t0520600-01	Rice	extracellular	20.05	21.8
Solyc08g077700.2.1	Tomato	nucleus	23.67	11.1
Solyc01g088700.2.1	Tomato	nucleus	24.06	10.3

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:K4DC84
InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253
PANTHER:PTHR23253:SF32	SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc12g009960.1	EnsemblPlants:Solyc12g009960.1.1
UniParc:UPI0002769CC5	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:3111232..3118201

Molecular Weight (calculated)

85290.1 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.494

Length

773 amino acids

Sequence
(BLAST)

001: MQADQTVISL RPGGGNRGGG SRVFGSRFDT SSTNSDLSGF RPHGGSSSLP SFKTGDSRFD SHERVRYTRD QLLQLREAVV LQLPEVILQI KHEVEAELFG
101: EDSSRGRVDS NVQVQSQGRY SEPDNRDWRN RPAQFSAPIE ERSWEALREN REFGGQYTRQ EQSQFARAQV SANQGGGPAP TLIKAEVPWS VRRGTLSDKD
201: RVLKTVKGIL NKLTPEKFDL LKGQLIDSGI TSADILEGVI SLIFDKAVLE PTFCPMYAQL CSDLNEKLPP FPSDEPGGKE ITFKRVLLNN CQEAFEGSDK
301: LREEMRRMTA PEQESERKDK ERLIKLRTLG NIRLIGELLK QNMVPEKIVH HIVQELLGQD PKSCPEEENV EAICQFFNTI GKQLDKKQKS RHINDIYFNQ
401: LKELSTNPQL VARLRFLVRD VLDLRANNWV PRREEVKAKT INEIHSEAEK TLGLRPGATL SIRNARAPPG IQGNLGPGGY PINRPGTGGM MPGMPGARKM
501: PGMPGMDNDN WEVPRSRMPR GAQQPLIGKS PALNTRLLPQ GSNVGMSGRS SALLQGSGGP PVRPSGYVSG MEPVSQVPVP VKPSPTSTVL PVAGKPQAPA
601: ARSNPEELKR KTVSLLEEYF SVRILDEALQ CIEELKSPAF YPEVVEKAIS LGLDKSPPRV EPVAQLLEHL SAEKVFTATD LATGCLNFAS QLEDLAMDLP
701: KAPANFGEII SRLVLTGAMD FKLVNEILQK VTDDLYQKDL FAAIMKAISS SPTGQGVLDS QAPDVKACKN LFQ

Best Arabidopsis Sequence Match ( AT5G57870.2 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVPVQSA SRFSEPDSRD WRSRSTQPPP SGEERSWDNL REAKDSRYVE ASQYNRQDQP NSQFSRANIS SNQGGGPAPV LVKAEVPWSA
201: RRGNLSENDR VLKTVKGILN KLTPEKYDLL KGQLIESGIT SADILKGVIT LIFDKAVLEP TFCPMYAKLC SDINDQLPTF PPAEPGDKEI TFKRVLLNIC
301: QEAFEGASQL REELRQMSAP DQEAERNDKE KLLKLKTLGN IRLIGELLKQ KMVPEKIVHH IVQELLGADE KVCPAEENVE AICHFFKTIG KQLDGNVKSK
401: RINDVYFKRL QALSKNPQLE LRLRFMVQNI IDMRSNGWVP RREEMKARTI TEIHTEAEKN LGLRPGATAN MRRGMVSSGG PVSPGPVYPG GRPGAGGLMP
501: GMPGTRRMPG MPGVDNDNWE VPRTRSMSRR DGPGPLHSPA VSKSASMNTR LLPQGSSGIM SGKTSALLQG SGSVSRPVTV SAERPAQSVA PLTVPVPVEK
601: PQPSGPKLSE EVLQRKTKSL LEEYFNVRLL GEALQCVEEL GLPSYHPEFV KEAISLSLEK SPPVVEPIAT LLEYLLSKKV VAPKDLETGF LLYGAMLDDI
701: GIDLPKAPNN FGEIVGKLIL AGGVDFKLVR EIIGKMEDDR FQKMVVDAAV RIVESSEQGK SLLASQAADI EACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.