Factsheet for Bra020407.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008045.1-P
Bra016037.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57870.1	Bra008045.1-P	AT1G72730.1	21798944
AT5G57870.1	Bra016037.1-P	AT1G72730.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32742	Canola	plastid	99.87	99.87
AT5G57870.1	Thale cress	plastid	87.79	86.67
GSMUA_Achr4P06000_001	Banana	cytosol	3.77	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	64.68	62.72
Solyc07g005810.2.1	Tomato	plastid	62.6	62.35
PGSC0003DMT400029102	Potato	cytosol, plastid	62.08	61.28
Bra011218.1-P	Field mustard	plastid	43.38	61.06
KRH55033	Soybean	endoplasmic reticulum	61.3	60.9
KRH63081	Soybean	endoplasmic reticulum	60.91	60.59
Solyc12g009960.1.1	Tomato	nucleus	60.65	60.41
PGSC0003DMT400020464	Potato	cytosol	60.52	60.28
KRH72326	Soybean	endoplasmic reticulum	61.17	60.08
KRH03030	Soybean	endoplasmic reticulum	61.17	59.7
Bra024051.1-P	Field mustard	cytosol	57.92	59.63
Bra011211.1-P	Field mustard	plastid	57.01	58.61
GSMUA_Achr9P22750_001	Banana	plastid	54.29	56.18
GSMUA_Achr4P05990_001	Banana	cytosol	10.52	55.1
Zm00001d003147_P001	Maize	plastid	55.97	54.83
EES12452	Sorghum	cytosol	56.23	54.74
Zm00001d025777_P007	Maize	plastid	55.45	54.39
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	61.82	53.91
Os02t0611500-01	Rice	cytosol	54.16	53.46
HORVU2Hr1G086240.1	Barley	cytosol	52.21	53.39
TraesCS2B01G373600.1	Wheat	cytosol	54.16	52.85
GSMUA_AchrUn_...	Banana	cytosol	51.17	52.81
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	53.9	52.66
TraesCS2A01G354900.1	Wheat	cytosol	54.03	52.66
Os04t0499300-01	Rice	plastid	52.86	50.5
GSMUA_Achr3P28040_001	Banana	cytosol	27.01	46.12
Solyc07g005780.1.1	Tomato	cytosol	25.58	43.78
GSMUA_Achr4P05970_001	Banana	cytosol	8.31	42.38
GSMUA_Achr4P12750_001	Banana	cytosol	56.88	37.76
HORVU6Hr1G023180.1	Barley	cytosol	13.77	35.93
Os06t0520600-01	Rice	extracellular	19.09	20.68
Bra014505.1-P	Field mustard	cytosol	23.77	11.05

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra020407	EnsemblPlants:Bra020407.1	EnsemblPlants:Bra020407.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	UniProt:M4DV64	InterPro:MIF4-like_sf	InterPro:MIF4G-like_typ-3
PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32	SMART:SM00543
SMART:SM00544	SUPFAM:SSF48371	UniParc:UPI0002545D05	SEG:seg	:	:

Description

AT5G57870 (E=0.0) | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative

Coordinates

chrA02:-:6577560..6580951

Molecular Weight (calculated)

84271.1 Da

IEP (calculated)

8.519

GRAVY (calculated)

-0.466

Length

770 amino acids

Sequence
(BLAST)

001: MQQGDKSVLS LRPGGGRGNR IFGSSSSSSS ISFGSLSSSD LPLLRPHGGA PPSSFPFKGG DSRFDGRERV KYTREQLLEL KETAQLSDEI LKVKRETELE
101: LFGEEQTWAR GETVVSNVVP VQSASRFSEP DTRNWRSRSA AQPPPSGEER SWENLREARD SRYVEANQYN RQGQPRGQAS NQGGGPAPVL VKAEVPWSAR
201: RGNLSENDRV LKTVKGILNK LTPEKYDLLK GQLIDAGITS ADILKGVITL IFDKAVLEPT FCPMYAELCS DINDKLPTFP PEEPGGKEIT FKRVLLNICQ
301: EAFEGASNLR EELKQMSAPD QEAERSDKEK LLKLKTLGNI RLIGELLKQK MVPEKIVHHI VQELLGADEK ACPAEENVEA ICHFFKTIGK QLDGNMKSKR
401: INDAYFKRLQ DLSKNPHLEL RLRFMVQNII DLRSNGWVPR REEMKAKTIT EIHSDAEKNM GLRPGATANM RKGMASSSGP LSPGPIYPGG RPGAGGLMPG
501: MPGTRRMPGA PVGDNDNWEV PRTRSMSRRD GPGPLHSPAM GKSTSMNTRL LPQGSSGFMS GKTSALLQGS SSRPAEQPVQ RAAPVAVPAP VEKPQASAAP
601: KLSEEVLKSK TKSLLEEYFN VRLLDEAMQC LVDLASPSYH AEFVNEAITL ALEKSPPVVE PIASLLVYLL SKKVVTPKDL ETGCLMFGAM LDDVGIDLPK
701: APNNFGEIVG KLIVTGGVDF KFVREVLGKM EDDRFQKAVI DAAVRIVESS EQGKSLLASQ AADVEACRNL

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.