Factsheet for TraesCS2A01G354900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G149200.1
TraesCS1B01G167100.1
TraesCS1D01G146500.1
TraesCS4A01G182300.1
TraesCS4B01G136100.2
TraesCS4D01G130900.1
TraesCS5A01G153500.1
TraesCS5B01G152300.1
TraesCS5D01G158800.1
TraesCS6A01G110100.2
TraesCS6A01G155300.1
TraesCS6A01G186600.1
TraesCS6A01G186800.1
TraesCS6B01G138400.1
TraesCS6B01G183400.1
TraesCS6B01G217700.1
TraesCS6B01G217800.1
TraesCS6D01G098500.1
TraesCS6D01G145200.1
TraesCS6D01G173700.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G24050.1	TraesCS6A01G110100.2	AT1G27360.1	21798944
AT2G24050.1	TraesCS6A01G155300.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G138400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6B01G183400.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G098500.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS6D01G145200.1	AT1G27360.1	21798944
AT2G24050.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT2G24050.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS5D01G158800.1	AT3G08530.1	21798944
AT2G24050.1	TraesCS1A01G149200.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1B01G167100.1	AT5G35620.1	21798944
AT2G24050.1	TraesCS1D01G146500.1	AT5G35620.1	21798944
AT5G57870.1	TraesCS6A01G186600.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6A01G186800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217700.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6B01G217800.1	AT1G72730.1	21798944
AT5G57870.1	TraesCS6D01G173700.3	AT1G72730.1	21798944
AT5G57870.1	TraesCS4A01G182300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS4B01G136100.2	AT3G08530.1	21798944
AT5G57870.1	TraesCS4D01G130900.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5A01G153500.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5B01G152300.1	AT3G08530.1	21798944
AT5G57870.1	TraesCS5D01G158800.1	AT3G08530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G353600.1	Wheat	cytosol, golgi, nucleus	98.35	98.6
TraesCS2B01G373600.1	Wheat	cytosol	98.35	98.48
HORVU2Hr1G086240.1	Barley	cytosol	91.9	96.41
EES12452	Sorghum	cytosol	78.61	78.51
Zm00001d003147_P001	Maize	plastid	77.22	77.61
Zm00001d025777_P007	Maize	plastid	76.58	77.07
Os04t0499300-01	Rice	plastid	75.57	74.07
GSMUA_Achr4P06000_001	Banana	cytosol	3.67	70.73
VIT_11s0037g00490.t01	Wine grape	plastid	60.38	60.08
CDY69274	Canola	cytosol, mitochondrion	24.68	59.63
GSMUA_Achr9P22750_001	Banana	plastid	55.19	58.6
Solyc07g005810.2.1	Tomato	plastid	57.22	58.47
Solyc12g009960.1.1	Tomato	nucleus	57.09	58.34
PGSC0003DMT400020464	Potato	cytosol	56.84	58.09
KRH55033	Soybean	endoplasmic reticulum	56.71	57.81
PGSC0003DMT400029102	Potato	cytosol, plastid	56.84	57.56
KRH72326	Soybean	endoplasmic reticulum	57.09	57.53
GSMUA_AchrUn_...	Banana	cytosol	54.18	57.37
KRH03030	Soybean	endoplasmic reticulum	57.22	57.29
KRH63081	Soybean	endoplasmic reticulum	55.95	57.11
CDY39236	Canola	cytosol	53.04	56.7
GSMUA_Achr4P05990_001	Banana	cytosol	10.51	56.46
Bra024051.1-P	Field mustard	cytosol	53.29	56.28
CDY28211	Canola	mitochondrion	33.29	55.72
AT5G57870.1	Thale cress	plastid	54.68	55.38
CDY28203	Canola	cytosol	35.7	55.19
CDX72262	Canola	cytosol	51.9	54.96
CDY32742	Canola	plastid	52.78	54.16
Bra020407.1-P	Field mustard	plastid	52.66	54.03
Bra011211.1-P	Field mustard	plastid	51.14	53.94
CDX68687	Canola	plastid	51.01	53.88
AT2G24050.1	Thale cress	plastid	50.63	53.55
Bra011218.1-P	Field mustard	plastid	36.96	53.38
CDY02774	Canola	plastid	51.9	53.11
VIT_04s0008g06770.t01	Wine grape	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.86	52.66
GSMUA_Achr3P28040_001	Banana	cytosol	28.23	49.45
GSMUA_Achr4P05970_001	Banana	cytosol	8.73	45.7
AT4G30680.1	Thale cress	mitochondrion, plastid	14.3	42.97
Solyc07g005780.1.1	Tomato	cytosol	24.05	42.22
AT1G62410.1	Thale cress	cytosol	11.39	40.36
GSMUA_Achr4P12750_001	Banana	cytosol	59.11	40.26
TraesCS2A01G390600.1	Wheat	nucleus, plastid	22.41	9.93
TraesCS2A01G209100.1	Wheat	nucleus	23.16	9.75

Protein Annotations

Gene3D:1.25.40.180	MapMan:17.4.2.4.2	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005515	InterPro:IPR003891	InterPro:IPR016021	InterPro:Initiation_fac_eIF4g_MI	InterPro:MIF4-like_sf
InterPro:MIF4G-like_typ-3	PFAM:PF02847	PFAM:PF02854	PFscan:PS51366	PANTHER:PTHR23253	PANTHER:PTHR23253:SF32
SMART:SM00543	SMART:SM00544	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS2A01G354900	EnsemblPlants:TraesCS2A01G354900.1	SEG:seg

Description

No Description!

Coordinates

chr2A:+:597498765..597504326

Molecular Weight (calculated)

86535.4 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.483

Length

790 amino acids

Sequence
(BLAST)

001: MTTDQPVISL RPGGGGGGGG PRGGRLFAPA FAVAASGSGD FLRPHGGGAS GVSRIGDLHS ESRERVRYSR DQLLDLRKIT DVTEQILRLQ QEIEAELHGD
101: DQSWVRNDSN VQLQTQTQTQ VQAQNRFTET DNRDWRARTE KPPAPAVPEE KSWDNIREVK EQYNASGRQQ EQFNRQDQSS SQKAQVGPPP ALIKADVPWS
201: ARRGNLSEKD RVLKTVKGIL NKLTPEKFDL LKGQLLDSGI TTADILKDVI SLIFEKAVFE PTFCPMYAQL CSELNDNLPT FPSEEPGGKE ITFKRVLLNN
301: CQEAFEGADS LRVEIASLTG PDQEMEKRDK ERIFKLRTLG NIRLIGELLK QKMVPEKIVH HIVKELLGSD KKACPDEEHV EAICQFFNTI GKQLDENPKS
401: RRINDTYFVQ IRELVANPQL TPRSKFMVRD LIDLRSNNWV PRRAEIKAKT ISEIHTEAEK NLGLRPGATA NMRNGRNAPG GPLSPGGFSV NRPGTGGMMP
501: GMPGSRKMPG MPGLDNDNWE VQRSRSMPRG DPLRNQGSLI NKVSSINKPS PINPRLLPQG TGALIGKSAL LGTGGPPSRP SSITASPTPL PAQTTASPKP
601: SSATPASVPI PDKAASSAKV IPAGLEKKTA SLLEEYFGIR ILDEAQQCIE ELQSPDYHPE IVKEAINLAL DKGASFVDPL VKLLEHLYTK KTFKTEDLEN
701: GCLLYGSLLE DIGIDLPKAP TQFGEVIARL ILSCGLRFEA VEGILKAMED TFFRKAIFTS VTKTLEADPA GQAILSSHAA VVDACNSLSI

Best Arabidopsis Sequence Match ( AT5G57870.1 )
(BLAST)

001: MQQGDQTVLS LRPGGGRGNR LFGSSSSSSS LSFGSLSSSD LPLLRPHGGA PASSFPFKGG DSRFDGRERV KYTREQLLEL KETTQLSDEI LRVQRETAAE
101: LFGEEGTWAR GESVVSNLVP VQSASRFSEP DSRDWRSRST QPPPSGEERS WDNLREAKDS RYVEASQYNR QDQPNSQFSR ANISSNQGGG PAPVLVKAEV
201: PWSARRGNLS ENDRVLKTVK GILNKLTPEK YDLLKGQLIE SGITSADILK GVITLIFDKA VLEPTFCPMY AKLCSDINDQ LPTFPPAEPG DKEITFKRVL
301: LNICQEAFEG ASQLREELRQ MSAPDQEAER NDKEKLLKLK TLGNIRLIGE LLKQKMVPEK IVHHIVQELL GADEKVCPAE ENVEAICHFF KTIGKQLDGN
401: VKSKRINDVY FKRLQALSKN PQLELRLRFM VQNIIDMRSN GWVPRREEMK ARTITEIHTE AEKNLGLRPG ATANMRRGMV SSGGPVSPGP VYPGGRPGAG
501: GLMPGMPGTR RMPGMPGVDN DNWEVPRTRS MSRRDGPGPL HSPAVSKSAS MNTRLLPQGS SGIMSGKTSA LLQGSGSVSR PVTVSAERPA QSVAPLTVPV
601: PVEKPQPSGP KLSEEVLQRK TKSLLEEYFN VRLLGEALQC VEELGLPSYH PEFVKEAISL SLEKSPPVVE PIATLLEYLL SKKVVAPKDL ETGFLLYGAM
701: LDDIGIDLPK APNNFGEIVG KLILAGGVDF KLVREIIGKM EDDRFQKMVV DAAVRIVESS EQGKSLLASQ AADIEACRNL

Arabidopsis Description

EIF(ISO)4G1Eukaryotic translation initiation factor isoform 4G-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZT6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.