Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G354900.1 | |
| TraesCS2B01G373600.1 | |
| TraesCS2D01G353600.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72730.1 | TraesCS2A01G354900.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2B01G373600.1 | AT5G57870.1 | 21798944 |
| AT1G72730.1 | TraesCS2D01G353600.1 | AT5G57870.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G217800.1 | Wheat | cytosol | 71.09 | 92.87 |
| HORVU7Hr1G073770.1 | Barley | cytosol, nucleus | 79.09 | 67.97 |
| VIT_04s0008g00990.t01 | Wine grape | cytosol | 13.64 | 60.98 |
| Solyc12g096000.1.1 | Tomato | cytosol, nucleus, unclear | 43.09 | 60.15 |
| TraesCS7A01G419400.1 | Wheat | cytosol | 44.18 | 58.7 |
| Solyc12g095990.1.1 | Tomato | nucleus | 43.64 | 58.11 |
| PGSC0003DMT400075339 | Potato | cytosol | 43.64 | 58.11 |
| PGSC0003DMT400075336 | Potato | cytosol | 43.27 | 58.05 |
| Solyc07g040750.1.1 | Tomato | cytosol | 43.27 | 57.63 |
| Solyc08g062800.2.1 | Tomato | extracellular, plastid | 43.09 | 57.38 |
| PGSC0003DMT400021166 | Potato | cytosol | 43.09 | 57.38 |
| KRH61534 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 43.09 | 57.38 |
| CDY39079 | Canola | cytosol | 42.73 | 57.04 |
| Bra021517.1-P | Field mustard | cytosol | 42.73 | 57.04 |
| KRH52210 | Soybean | cytosol, endoplasmic reticulum | 42.73 | 56.9 |
| Bra027387.1-P | Field mustard | cytosol | 42.55 | 56.8 |
| CDY08220 | Canola | cytosol | 42.36 | 56.55 |
| Bra014365.1-P | Field mustard | cytosol | 42.36 | 56.55 |
| CDY67069 | Canola | cytosol | 10.36 | 56.44 |
| AT1G54270.1 | Thale cress | cytosol | 42.18 | 56.31 |
| CDY10607 | Canola | cytosol | 42.0 | 56.2 |
| CDY02469 | Canola | cytosol | 42.0 | 56.07 |
| Bra030893.1-P | Field mustard | cytosol | 42.0 | 56.07 |
| Bra001530.1-P | Field mustard | cytosol | 42.36 | 56.01 |
| Bra029124.1-P | Field mustard | cytosol | 41.45 | 55.61 |
| CDY32586 | Canola | cytosol | 38.18 | 55.56 |
| TraesCS6A01G116200.1 | Wheat | endoplasmic reticulum, vacuole | 44.0 | 54.75 |
| AT1G72730.1 | Thale cress | cytosol | 41.09 | 54.59 |
| Bra037977.1-P | Field mustard | cytosol | 40.73 | 54.37 |
| CDY24057 | Canola | cytosol | 40.55 | 54.13 |
| CDY49861 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 41.82 | 53.86 |
| Bra008045.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 41.82 | 53.86 |
| CDY33073 | Canola | cytosol | 40.18 | 53.64 |
| VIT_04s0008g00980.t01 | Wine grape | cytosol | 8.18 | 53.57 |
| AT3G13920.5 | Thale cress | cytosol | 40.18 | 52.74 |
| CDY55205 | Canola | cytosol | 40.55 | 52.72 |
| CDY72259 | Canola | cytosol | 21.09 | 52.25 |
| CDX97528 | Canola | cytosol | 40.18 | 52.0 |
| CDX82505 | Canola | cytosol | 40.0 | 51.4 |
| CDX75739 | Canola | cytosol | 40.18 | 50.69 |
| CDY11154 | Canola | cytosol | 17.82 | 48.51 |
| TraesCS2A01G552800.1 | Wheat | cytosol | 31.27 | 46.61 |
| TraesCS6A01G416700.1 | Wheat | nucleus | 31.82 | 42.37 |
| CDY54037 | Canola | cytosol | 20.55 | 42.32 |
| GSMUA_Achr9P13950_001 | Banana | mitochondrion | 22.73 | 40.72 |
| CDY53867 | Canola | cytosol | 30.73 | 40.05 |
| TraesCS6A01G186800.1 | Wheat | cytosol | 87.45 | 37.76 |
| CDX72939 | Canola | mitochondrion, nucleus | 30.73 | 36.27 |
| Os02t0221300-01 | Rice | cytosol | 55.27 | 34.51 |
| Bra016037.1-P | Field mustard | cytosol | 41.45 | 31.36 |
| OQU84655 | Sorghum | cytosol | 42.36 | 30.46 |
| TraesCS1A01G443400.1 | Wheat | cytosol | 22.55 | 28.57 |
| Zm00001d016351_P002 | Maize | nucleus | 45.64 | 28.14 |
| TraesCS3A01G200100.1 | Wheat | cytosol | 22.18 | 27.98 |
| KXG29825 | Sorghum | cytosol | 42.91 | 26.76 |
| TraesCS2A01G370200.2 | Wheat | cytosol | 22.18 | 24.35 |
| Zm00001d016350_P001 | Maize | vacuole | 22.18 | 24.21 |
| TraesCS6A01G236800.1 | Wheat | cytosol | 22.91 | 24.09 |
| TraesCS1A01G174600.1 | Wheat | cytosol | 22.0 | 23.05 |
| CDY68148 | Canola | nucleus | 30.91 | 23.0 |
| TraesCS4A01G031800.1 | Wheat | cytosol | 19.27 | 20.87 |
| TraesCS4A01G340500.1 | Wheat | cytosol | 17.82 | 20.5 |
| TraesCS6A01G234000.1 | Wheat | mitochondrion | 16.18 | 14.81 |
| CDY49860 | Canola | cytosol | 2.55 | 11.2 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF534 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6A01G186600 | EnsemblPlants:TraesCS6A01G186600.1 | TIGR:cd00079 | : |
Description
No Description!
Coordinates
chr6A:+:222127648..222136557
Molecular Weight (calculated)
60629.3 Da
IEP (calculated)
9.194
GRAVY (calculated)
-0.297
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKPPIKNVY TRRDRKQKES TEGSTLFADI SSNSAHEGIQ KPPIKIVFER RSDPKQKGST GGQLASKELN KGMNPGSSSH ATRIATLTCN ILDSKNLLEK
101: QHEKEMKMAE TAAKTLGAEG AQCIKGSSAC MIRVTQTKGV DMATTTLEGA RFDGKQPVSK MTTRLTQFYE EFNTYNEIYD SFVEMGLREN LLKGIYAYGL
201: AMPSAIHQRR IVPLCKGLDV IQQSLSGTTV TLACGVLQRL DYGSTECQAL VLVPTRDLAQ DTVKVIGALG QWLGVKAHAC LGGTSIREDK QISSSSNQVI
301: VATPGRTLDM LRRRALCPDN IRMFVLDEAD EILAGGLKNQ IYDIIQLLPA KIQFAVFSTT MSNEALELCR KCMNKPMKVI VPKDEELEGF SVKQFYVKAE
401: NEESKFQKLC DLFDTMAVTQ NIIFVNARRK VKPLTEKIRG RGYTVSASHG GMDQHSRDVA VQDLQSGSSR VLVTTNLRGA DALQVPVVIN YDLPTQPTQY
501: LRHVRRSGQP GGIGVAISFV ARADERVLSG IQRFCNTQMA ELPSNVADLL
101: QHEKEMKMAE TAAKTLGAEG AQCIKGSSAC MIRVTQTKGV DMATTTLEGA RFDGKQPVSK MTTRLTQFYE EFNTYNEIYD SFVEMGLREN LLKGIYAYGL
201: AMPSAIHQRR IVPLCKGLDV IQQSLSGTTV TLACGVLQRL DYGSTECQAL VLVPTRDLAQ DTVKVIGALG QWLGVKAHAC LGGTSIREDK QISSSSNQVI
301: VATPGRTLDM LRRRALCPDN IRMFVLDEAD EILAGGLKNQ IYDIIQLLPA KIQFAVFSTT MSNEALELCR KCMNKPMKVI VPKDEELEGF SVKQFYVKAE
401: NEESKFQKLC DLFDTMAVTQ NIIFVNARRK VKPLTEKIRG RGYTVSASHG GMDQHSRDVA VQDLQSGSSR VLVTTNLRGA DALQVPVVIN YDLPTQPTQY
501: LRHVRRSGQP GGIGVAISFV ARADERVLSG IQRFCNTQMA ELPSNVADLL
001: MAGSAPEGTQ FDTRQFDQRL NEVLDGQDEF FTSYDEVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
101: LDYALLQCQA LVLAPTRELA QQIEKVMRAL GDYQGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLRRQSLRPD CIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTLDDQRML FDIQKFYNVV
401: VEELPSNVAD LL
Arabidopsis Description
TIF4A-2eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.