Factsheet for Bra021517.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39079	Canola	cytosol	99.76	99.76
Bra001530.1-P	Field mustard	cytosol	98.54	97.6
Bra027387.1-P	Field mustard	cytosol	97.57	97.57
Bra030893.1-P	Field mustard	cytosol	97.33	97.33
Bra014365.1-P	Field mustard	cytosol	96.6	96.6
Bra030892.1-P	Field mustard	cytosol	15.78	95.59
PGSC0003DMT400075339	Potato	cytosol	94.42	94.19
Solyc12g096000.1.1	Tomato	cytosol, nucleus, unclear	90.05	94.16
PGSC0003DMT400021166	Potato	cytosol	93.93	93.7
Solyc08g062800.2.1	Tomato	extracellular, plastid	93.93	93.7
Solyc12g095990.1.1	Tomato	nucleus	93.93	93.7
PGSC0003DMT400075336	Potato	cytosol	93.2	93.66
KRH61534	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.99	91.77
KRH52210	Soybean	cytosol, endoplasmic reticulum	91.75	91.53
Bra037977.1-P	Field mustard	cytosol	91.26	91.26
CDY72259	Canola	cytosol	48.79	90.54
Bra029124.1-P	Field mustard	cytosol	90.05	90.49
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.53	87.35
Bra038231.1-P	Field mustard	cytosol	60.44	61.03
Bra032127.1-P	Field mustard	cytosol	60.44	61.03
Bra022449.1-P	Field mustard	cytosol	60.44	61.03
Bra014267.1-P	Field mustard	cytosol	54.13	55.2
TraesCS6B01G217800.1	Wheat	cytosol	55.83	54.63
Bra016037.1-P	Field mustard	cytosol	90.29	51.17
GSMUA_Achr9P13950_001	Banana	mitochondrion	35.68	47.88
TraesCS6A01G186600.1	Wheat	cytosol	57.04	42.73
Bra008527.1-P	Field mustard	cytosol	30.1	37.58
HORVU7Hr1G073770.1	Barley	cytosol, nucleus	55.58	35.78
Bra023311.1-P	Field mustard	cytosol	35.68	34.43
Bra023312.1-P	Field mustard	cytosol	35.44	33.49
Bra008984.1-P	Field mustard	cytosol	33.5	32.39
Bra007587.1-P	Field mustard	cytosol	36.41	31.71
Bra003442.1-P	Field mustard	cytosol	36.41	31.45
Bra008983.1-P	Field mustard	cytosol	33.98	29.66
Bra037351.1-P	Field mustard	cytosol	36.65	29.61
Bra000965.1-P	Field mustard	cytosol	35.92	28.85
Bra039312.1-P	Field mustard	cytosol	35.92	28.63
OQU84655	Sorghum	cytosol	51.7	27.84
Bra040687.1-P	Field mustard	cytosol	33.5	27.82
Bra028547.1-P	Field mustard	cytosol	33.01	27.7
Bra006091.1-P	Field mustard	cytosol	33.98	26.72
Os02t0221300-01	Rice	cytosol	56.07	26.22
Zm00001d016350_P001	Maize	vacuole	29.13	23.81
Bra023712.1-P	Field mustard	plastid	26.21	22.59
Zm00001d016351_P002	Maize	nucleus	48.54	22.42
KXG29825	Sorghum	cytosol	47.09	22.0
TraesCS6A01G186800.1	Wheat	cytosol	58.01	18.76
TraesCS6D01G173700.3	Wheat	cytosol	58.25	17.86
TraesCS6B01G217700.1	Wheat	cytosol	56.8	17.53

Protein Annotations

MapMan:17.4.2.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra021517	EnsemblPlants:Bra021517.1	EnsemblPlants:Bra021517.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DYC1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF551
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002544561

Description

AT3G13920 (E=5e-232) EIF4A1, RH4, TIF4A1 | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1); ATP-dependent helicase/ translation initiation factor

Coordinates

chrA01:+:24822084..24823865

Molecular Weight (calculated)

46607.1 Da

IEP (calculated)

5.357

GRAVY (calculated)

-0.222

Length

412 amino acids

Sequence
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDEVHDS FDVMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFAIVQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKGHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEDWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRG
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INYDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTKDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Best Arabidopsis Sequence Match ( AT3G13920.1 )
(BLAST)

001: MAGSAPEGTQ FDARQFDQKL NEVLEGQDEF FTSYDDVHES FDAMGLQENL LRGIYAYGFE KPSAIQQRGI VPFCKGLDVI QQAQSGTGKT ATFCSGVLQQ
101: LDFSLIQCQA LVLAPTRELA QQIEKVMRAL GDYLGVKVHA CVGGTSVRED QRILQAGVHV VVGTPGRVFD MLKRQSLRAD NIKMFVLDEA DEMLSRGFKD
201: QIYDIFQLLP PKIQVGVFSA TMPPEALEIT RKFMSKPVRI LVKRDELTLE GIKQFYVNVE KEEWKLETLC DLYETLAITQ SVIFVNTRRK VDWLTDKMRS
301: RDHTVSATHG DMDQNTRDII MREFRSGSSR VLITTDLLAR GIDVQQVSLV INFDLPTQPE NYLHRIGRSG RFGRKGVAIN FVTRDDERML FDIQKFYNVV
401: VEELPSNVAD LL

Arabidopsis Description

EIF4A1Eukaryotic translation initiation factor 4A1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.