Factsheet for Bra023712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47205	Canola	plastid	98.95	98.95
CDY02574	Canola	plastid	96.86	96.86
AT5G19210.2	Thale cress	plastid	86.82	87.92
KRH02098	Soybean	cytosol	33.05	68.7
PGSC0003DMT400023224	Potato	nucleus	45.82	68.22
KRH51049	Soybean	plastid	63.6	64.41
VIT_05s0020g02870.t01	Wine grape	extracellular	65.27	64.2
KXG34209	Sorghum	plastid	58.16	62.75
Solyc01g079800.2.1	Tomato	plastid	59.62	62.09
Zm00001d011790_P001	Maize	plastid	57.53	61.52
TraesCS3B01G592900.1	Wheat	plastid	56.28	60.04
TraesCS3D01G530600.1	Wheat	plastid	56.07	59.69
Os01t0970600-01	Rice	plastid	58.79	59.28
GSMUA_Achr6P27990_001	Banana	plastid	58.79	57.94
HORVU3Hr1G114220.3	Barley	plastid	56.07	54.14
Bra030892.1-P	Field mustard	cytosol	4.6	32.35
Bra030893.1-P	Field mustard	cytosol	23.22	26.94
Bra014365.1-P	Field mustard	cytosol	23.22	26.94
Bra001530.1-P	Field mustard	cytosol	23.01	26.44
Bra027387.1-P	Field mustard	cytosol	22.59	26.21
Bra021517.1-P	Field mustard	cytosol	22.59	26.21
Bra029124.1-P	Field mustard	cytosol	22.38	26.1
Bra008527.1-P	Field mustard	cytosol	17.78	25.76
Bra037977.1-P	Field mustard	cytosol	21.97	25.49
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	22.38	25.06
Bra032127.1-P	Field mustard	cytosol	20.71	24.26
Bra038231.1-P	Field mustard	cytosol	20.71	24.26
Bra022449.1-P	Field mustard	cytosol	20.71	24.26
Bra014267.1-P	Field mustard	cytosol	18.83	22.28
Bra007587.1-P	Field mustard	cytosol	21.55	21.78
Bra003442.1-P	Field mustard	cytosol	21.55	21.59
Bra023311.1-P	Field mustard	cytosol	19.25	21.55
Bra023312.1-P	Field mustard	cytosol	19.04	20.87
Bra008984.1-P	Field mustard	cytosol	18.41	20.66
Bra037351.1-P	Field mustard	cytosol	21.97	20.59
Bra039312.1-P	Field mustard	cytosol	21.55	19.92
Bra000965.1-P	Field mustard	cytosol	21.34	19.88
Bra008983.1-P	Field mustard	cytosol	19.04	19.28
Bra028547.1-P	Field mustard	cytosol	19.04	18.53
Bra040687.1-P	Field mustard	cytosol	17.99	17.34
Bra006091.1-P	Field mustard	cytosol	18.62	16.98
Bra016037.1-P	Field mustard	cytosol	22.18	14.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra023712	EnsemblPlants:Bra023712.1	EnsemblPlants:Bra023712.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	UniProt:M4E4K9	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF340	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000254326D	SEG:seg	:	:

Description

AT5G19210 (E=5e-223) | DEAD/DEAH box helicase, putative

Coordinates

chrA02:+:4694188..4696288

Molecular Weight (calculated)

53081.6 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.001

Length

478 amino acids

Sequence
(BLAST)

001: MASHQLLSVP HFSLLPKVSP FHPPFLSTPR KLSLFHSTTC SALQSSPNSR ITNLQAVTDT CSETESNAPT ETTALTLRNI CQGFVPEHIL HRQALMEEIG
101: FVFPTDIQRE ALPTLFTGRD CILHAQTGSG KTLTYLLLIL SLINPQRSSV QAVVVVPTRE LGMQVTKVAR MLAAKSTDAE VKGCTVMALL DGGMLRRHKS
201: WLKAEPPAIV VATVASLCHM LEKHILRLDS VKVLVVDEVD FLFYSSKQAG PVRKLLTSFS SCDKRQTVFA SASIPQHKHF VHDCMQQKWT KRDVVHIHVS
301: AITPMPLCLL HKFVVCGKKN KHQVLLALLE SDAPESAIIF VGEQSEKSKK AGNDPSTTLL IELLKTSYNG SLEILLLEED MNFNSRAASL TEIRQGGGFL
401: LVSTDIAARG IDLPETTHIF NFDLPQTATD YLHRAGRAGR KPFSDRKCIV TNLITSEERF VLQRFENELM FSCEELML

Best Arabidopsis Sequence Match ( AT5G19210.2 )
(BLAST)

001: MASQLLNVPH LAFFPKISYA SVFSTLKPSF FHSTSTRRAL KSSPSSRIIN LQAVAETSSE IESNSVTETT VPLTLRQICQ GFVPEHILHR MEEIGFVFPT
101: DIQREALPTL FTGRDCILHA QTGSGKTLTY LLLIFSLINP QRSSVQAVIV VPTRELGMQV TKVARMLAAK SEIDVKGCTV MALLDGGTLR RHKSWLKAEP
201: PAILVATVAS LCHMLEKHIF RIDSVRVLVV DEVDFLFYSS KQVGSVRKLL TSFSSCDKRQ TVFASASIPQ HKHFVHDCIQ QKWTKRDVVH VHVSAIMPMP
301: LCLLHRFVMC EKTNKHQVLL ALLESDAPES AIIFVGEQSE KSKKAGNDPS TTLLMEFLKT SYKGSLEILL LEGDMNFNSR AASLTEIRQG GGFLLVSTDI
401: AARGIDLPET THIFNFDLPQ TVTDYLHRAG RAGRKPFSDR KCIVANLITS EERFVLQRYE NELMFSCEEM ML

Arabidopsis Description

RH58DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3E9C3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.