Factsheet for Bra037351.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51147	Canola	cytosol	96.67	99.4
CDY07205	Canola	cytosol	93.53	97.15
AT4G00660.1	Thale cress	cytosol, mitochondrion	93.53	94.46
Bra000965.1-P	Field mustard	cytosol	94.12	93.57
Bra008527.1-P	Field mustard	cytosol	59.61	92.12
KRH04755	Soybean	cytosol	46.67	89.81
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	81.96	87.08
VIT_15s0046g03200.t01	Wine grape	cytosol	82.94	86.15
Solyc10g017530.2.1	Tomato	nucleus	82.35	85.54
KRH48170	Soybean	endoplasmic reticulum	84.31	85.49
KRH65098	Soybean	endoplasmic reticulum, nucleus	83.92	85.26
KRH48173	Soybean	mitochondrion	83.53	85.2
KRH65096	Soybean	nucleus	82.94	84.77
GSMUA_Achr1P00220_001	Banana	cytosol, mitochondrion	81.37	84.35
Solyc01g094350.2.1	Tomato	nucleus	82.16	84.14
GSMUA_Achr2P10560_001	Banana	cytosol	79.8	83.74
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	54.9	82.35
Os04t0533000-02	Rice	cytosol	79.8	81.73
GSMUA_Achr5P12220_001	Banana	cytosol	78.82	81.71
Os02t0641800-02	Rice	plasma membrane, plastid	80.59	80.91
Bra007587.1-P	Field mustard	cytosol	74.71	80.55
TraesCS2B01G387200.1	Wheat	cytosol	78.63	80.36
Bra003442.1-P	Field mustard	cytosol	74.9	80.08
TraesCS2A01G370200.2	Wheat	cytosol	78.43	79.84
HORVU6Hr1G060630.1	Barley	cytosol	80.59	79.34
TraesCS2D01G366700.1	Wheat	cytosol	78.24	78.54
TraesCS6B01G265300.1	Wheat	cytosol	80.39	78.39
TraesCS6D01G219400.1	Wheat	cytosol	80.2	78.2
TraesCS6A01G236800.1	Wheat	cytosol	80.2	78.2
Bra039312.1-P	Field mustard	cytosol	78.63	77.56
Zm00001d051268_P004	Maize	extracellular	79.22	77.39
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	76.08	77.14
Zm00001d017384_P008	Maize	cytosol	79.22	76.95
Os10t0503700-01	Rice	plasma membrane	78.24	76.58
EER91410	Sorghum	cytosol	76.08	76.53
EER91411	Sorghum	cytosol	75.88	76.33
KRH40488	Soybean	cytosol	80.59	76.25
TraesCS1A01G174600.1	Wheat	cytosol	77.25	75.05
TraesCS1B01G189900.1	Wheat	cytosol	77.06	74.86
TraesCS1D01G164500.1	Wheat	cytosol	76.86	74.52
GSMUA_Achr11P...	Banana	cytosol	80.98	73.1
HORVU1Hr1G046020.1	Barley	cytosol	76.86	69.5
Solyc05g048850.2.1	Tomato	mitochondrion	72.35	68.72
Bra030892.1-P	Field mustard	cytosol	5.29	39.71
Bra030893.1-P	Field mustard	cytosol	30.0	37.14
Bra014365.1-P	Field mustard	cytosol	29.8	36.89
Bra027387.1-P	Field mustard	cytosol	29.61	36.65
Bra021517.1-P	Field mustard	cytosol	29.61	36.65
Bra037977.1-P	Field mustard	cytosol	29.61	36.65
Bra029124.1-P	Field mustard	cytosol	29.41	36.59
Bra001530.1-P	Field mustard	cytosol	29.8	36.54
Bra008045.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.8	35.6
Bra032127.1-P	Field mustard	cytosol	28.43	35.54
Bra022449.1-P	Field mustard	cytosol	28.43	35.54
Bra038231.1-P	Field mustard	cytosol	28.43	35.54
Bra023311.1-P	Field mustard	cytosol	28.82	34.43
Bra014267.1-P	Field mustard	cytosol	27.06	34.16
Bra023312.1-P	Field mustard	cytosol	28.24	33.03
Bra008984.1-P	Field mustard	cytosol	27.45	32.86
Bra008983.1-P	Field mustard	cytosol	27.45	29.66
Bra006091.1-P	Field mustard	cytosol	28.24	27.48
Bra040687.1-P	Field mustard	cytosol	25.69	26.41
Bra028547.1-P	Field mustard	cytosol	24.51	25.46
Bra023712.1-P	Field mustard	plastid	20.59	21.97
Bra016037.1-P	Field mustard	cytosol	29.41	20.63

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra037351	EnsemblPlants:Bra037351.1	EnsemblPlants:Bra037351.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4F8D9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF555	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002541A50	SEG:seg

Description

AT4G00660 (E=5e-253) | DEAD/DEAH box helicase, putative

Coordinates

chrA09:-:934294..936873

Molecular Weight (calculated)

58103.6 Da

IEP (calculated)

8.386

GRAVY (calculated)

-0.423

Length

510 amino acids

Sequence
(BLAST)

001: MNNNNNNRGR YPPGIGAGRA AINSNPNFQS RPGYQQQPPP QYVQRGGYAQ QNHQQQFQQA TSQQVQQQHG YQQQQQWLRR PQISGGNSNG DAVAEVEKSV
101: LSEAVDTNSE DWKARLKLPA PDTRYRTEDV TATKGNEFED YFLKRELLMG IYEKGFERPS PIQEESIPIA LTGRDILARA KNGTGKTAAF CIPVLEKIDQ
201: DNNVIQAVII VPTRELALQT SQVCKELGKH LKIQVMVTTG GTSLKDDIMR LYQPVHLLVG TPGRILDLTK KGVCVLKDCS VFVMDEADKL LSQEFQPSVE
301: HLISFLPQNR QILMFSATFP VTVKDFKDRF LTNPYIINLM DELTLKGITQ FYAFVEERQK IHCLNTLFSK LQINQSIIFC NSVNRVELLA KKITELGYSC
401: FYIHAKMLQD HRNRVFHDFR NGACRNLVCT DLFTRGIDIQ AVNVVINFDF PKTAETYLHR VGRSGRFGHL GLAVNLITYE DRFNLYRIEQ ELGTEIKQIP
501: PHIDQAIYCQ

Best Arabidopsis Sequence Match ( AT4G00660.2 )
(BLAST)

001: MNNRGRYPPG IGAGRGAFNP NPNYQSRSGY QQHPPPQYVQ RGNYAQNHQQ QFQQAPSQPH QYQQQQQQQQ QWLRRGQIPG GNSNGDAVVE VEKTVQSEVI
101: DPNSEDWKAR LKLPAPDTRY RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGRD ILARAKNGTG KTAAFCIPVL EKIDQDNNVI
201: QAVIIVPTRE LALQTSQVCK ELGKHLKIQV MVTTGGTSLK DDIMRLYQPV HLLVGTPGRI LDLTKKGVCV LKDCSVLVMD EADKLLSQEF QPSVEHLISF
301: LPESRQILMF SATFPVTVKD FKDRFLTNPY VINLMDELTL KGITQFYAFV EERQKIHCLN TLFSKLQINQ SIIFCNSVNR VELLAKKITE LGYSCFYIHA
401: KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKNAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNL YRIEQELGTE IKQIPPHIDQ
501: AIYCQ

Arabidopsis Description

RH8DEAD-box ATP-dependent RNA helicase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXK6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.