Factsheet for TraesCS1B01G189900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G006100.1
TraesCS3D01G004500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G45810.1	TraesCS3A01G006100.1	AT1G26110.1	21798944
AT2G45810.1	TraesCS3D01G004500.1	AT1G26110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G164500.1	Wheat	cytosol	99.05	98.86
TraesCS1A01G174600.1	Wheat	cytosol	98.86	98.86
HORVU1Hr1G046020.1	Barley	cytosol	97.9	91.13
Os10t0503700-01	Rice	plasma membrane	86.67	87.33
KRH04755	Soybean	cytosol	43.81	86.79
EER91410	Sorghum	cytosol	83.62	86.59
EER91411	Sorghum	cytosol	83.43	86.39
Zm00001d013910_P002	Maize	endoplasmic reticulum, vacuole	55.81	86.18
Zm00001d032526_P006	Maize	cytosol, mitochondrion, nucleus	82.48	86.08
CDY54061	Canola	cytosol	52.57	84.66
CDY45702	Canola	cytosol	33.14	84.47
TraesCS2B01G387200.1	Wheat	cytosol	79.81	83.97
VIT_02s0025g03790.t01	Wine grape	cytosol, plastid	76.19	83.33
Solyc10g017530.2.1	Tomato	nucleus	76.95	82.28
Bra008527.1-P	Field mustard	cytosol	51.24	81.52
Solyc01g094350.2.1	Tomato	nucleus	76.19	80.32
KRH48170	Soybean	endoplasmic reticulum	76.57	79.92
KRH48173	Soybean	mitochondrion	75.62	79.4
KRH65096	Soybean	nucleus	75.05	78.96
KRH65098	Soybean	endoplasmic reticulum, nucleus	75.43	78.88
TraesCS6B01G265300.1	Wheat	cytosol	78.29	78.59
CDY51147	Canola	cytosol	74.1	78.43
CDY07205	Canola	cytosol	73.33	78.41
AT4G00660.1	Thale cress	cytosol, mitochondrion	74.86	77.82
CDX91901	Canola	cytosol	73.71	77.25
Bra037351.1-P	Field mustard	cytosol	74.86	77.06
Bra007587.1-P	Field mustard	cytosol	68.76	76.32
Bra000965.1-P	Field mustard	cytosol	74.48	76.22
CDX74342	Canola	cytosol	74.48	76.07
CDY48935	Canola	cytosol, plastid	68.57	75.79
Bra003442.1-P	Field mustard	cytosol	68.76	75.68
CDY58787	Canola	cytosol	69.33	75.52
CDX71756	Canola	cytosol	68.38	74.95
AT3G61240.1	Thale cress	cytosol	70.86	74.7
CDY37067	Canola	cytosol	70.67	72.75
GSMUA_Achr11P...	Banana	cytosol	78.1	72.57
CDY27357	Canola	cytosol, plastid	69.9	72.1
Bra039312.1-P	Field mustard	cytosol	70.67	71.76
AT2G45810.1	Thale cress	cytosol, plastid	71.81	71.4
Solyc05g048850.2.1	Tomato	mitochondrion	67.43	65.92
TraesCS6B01G144100.1	Wheat	cytosol	13.33	36.65
TraesCS7B01G320000.1	Wheat	cytosol	28.38	35.99
TraesCS2B01G584200.1	Wheat	mitochondrion	26.67	34.4
TraesCS6B01G472700.1	Wheat	nucleus	26.48	33.74
TraesCS3B01G224400.1	Wheat	cytosol	27.24	33.41
TraesCS1B01G477500.1	Wheat	cytosol	27.43	33.41
TraesCS6B01G217800.1	Wheat	cytosol	21.9	27.32
TraesCS6B01G144000.1	Wheat	golgi	28.57	27.22
TraesCS5B01G534600.1	Wheat	cytosol	24.0	26.14
TraesCS4B01G274200.1	Wheat	cytosol	24.0	24.9
TraesCS3B01G592900.1	Wheat	plastid	18.67	21.88
TraesCS6B01G262800.1	Wheat	mitochondrion	20.57	17.97
TraesCS6B01G217700.1	Wheat	cytosol	24.38	9.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF352	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1B01G189900	EnsemblPlants:TraesCS1B01G189900.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:340801136..340806711

Molecular Weight (calculated)

59281.7 Da

IEP (calculated)

8.251

GRAVY (calculated)

-0.520

Length

525 amino acids

Sequence
(BLAST)

001: MHHPRARYPP GYDYGGGGRG GNGGGGGGGG GGGGGNQNYY GGRNPHPQHH DYQQQQQQHA QRNSFPQQQQ QQHAQRNSFS QQQQQQHQQQ QHQQWLRRDQ
101: AAAQASGEGA ARTVARLDAV DTSSQDWKAQ LNIPAPDTRF RTEDVTATKG NEFEDYFLKR ELLMGIYEKG FERPSPIQEE SIPIALTGSD ILARAKNGTG
201: KTAAFCIPAL EKIDPEKNAI QVVILVPTRE LALQTSQVCK ELGKYLNIEV MVSTGGTSLK DDIMRLYQPV HLLAGTPGRI LDLTKKGICM LNECSMLIMD
301: EADKLLAPEF QPSVEQLIRY LPASRQLLLF SATFPVTVKD FKQKYLPRPY VINLMDELTL KGITQYYAFV EERQKVHCLN TLFSKLQINQ SIIFCNSVNR
401: VELLAKKITE LGYSCFYIHA KMLQDHRNRV FHDFRNGACR NLVCTDLFTR GIDIQAVNVV INFDFPKTAE TYLHRVGRSG RFGHLGLAVN LITYEDRFNM
501: YRIEQELGTE IKTIPPQIDL AEYCQ

Best Arabidopsis Sequence Match ( AT2G45810.1 )
(BLAST)

001: MNNNNNNRGR FPPGIGAAGP GPDPNFQSRN PNPPQPQQYL QSRTPFPQQP QPQPPQYLQS QSDAQQYVQR GYPQQIQQQQ QLQQQQQQQQ QQQEQQWSRR
101: AQLPGDPSYI DEVEKTVQSE AISDSNNEDW KATLKLPPRD NRYQTEDVTA TKGNEFEDYF LKRDLLRGIY EKGFEKPSPI QEESIPIALT GSDILARAKN
201: GTGKTGAFCI PTLEKIDPEN NVIQAVILVP TRELALQTSQ VCKELSKYLK IEVMVTTGGT SLRDDIMRLY QPVHLLVGTP GRILDLAKKG VCVLKDCAML
301: VMDEADKLLS VEFQPSIEEL IQFLPESRQI LMFSATFPVT VKSFKDRYLK KPYIINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS
401: VNRVELLAKK ITELGYSCFY IHAKMVQDHR NRVFHDFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR
501: FKMYQTEQEL GTEIKPIPSL IDKAIYCQ

Arabidopsis Description

RH6DEAD-box ATP-dependent RNA helicase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q94BV4]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.